Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014284 (lgoT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014284 showshow history
Names
lgoT yjjL JW4319 ECK4346 yjiZ b4356
Product
galactonate:proton symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4593361 4594722 1362 454
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lgoT Protein Sequence Similarity - RefSeq protein Accession Number: NP_418776
Reference: Escherichia coli K-12 MG1655 		Apr 2020
Person Approved synonym yjiZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated synonym yjjL Published Annotation in EcoGene - EG Number: EG12588
Reference: Escherichia coli K-12 MG1655 		Apr 2009
Person Approved synonym ECK4346 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4319 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4356 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product galactonate:proton symporter Published Annotation - EcoCyc Accession Number: EG12587
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Person Uncurated alternate product name putative transport protein, cryptic (joins former yjiZ and yjjL) (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative transport protein, cryptic, orf, joins former yjiZ and yjjL Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name L-galactonate transporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative L-galactonate transporter Experimental - PubMed ID: 17088549
Reference: Escherichia coli K-12 MG1655 		Feb 2021
Protein Family
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12588 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948879 Published Annotation - Entrez Gene Database ID: 948879
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39398 Published Annotation - Swiss-Prot Accession Number: P39398 Jan 2005
Automated Process Approved db xref GI:2367379 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39398 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014284 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport protein, cryptic, orf, joins former yjiZ and yjjL; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77312.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002727 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003266 yjjL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002904 yjjL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003843 yjjL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002572 lgoT CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001204 yjjL_1 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003943 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000912 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006856 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006631 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004355 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009808 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005920 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009453 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005042 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005771 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007436 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009383 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002882 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009190 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007703 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008207 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007595 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010699 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006578 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008510 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006870 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006064 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006206 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005679 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005339 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029530 yjiZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009274 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004453 yjiZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005147 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004929 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005077 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004737 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004892 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135437 yjiZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001368 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001590 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004696 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002962 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000466 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003085 yjjL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000897 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003909 yjjL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000245 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011532 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000604 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288363 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006844 yjiZ CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064718 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000761 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004499 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007741 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076002 yjiZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0090599 yjiZ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004662 yjiZ CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4588361 to 4599722
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014273yjiACDScomplement45879094588865Downstream
ABE-0014276yjiXCDScomplement45888764589079Downstream
ABE-0014278btsTCDScomplement45891294591279Downstream
ABE-0014282tsrCDSforward45916574593312Downstream
ABE-0285703repeat_regionforward45933264593351Downstream
ABE-0014284lgoTCDScomplement45933614594722Matches
ABE-0014287lgoRCDScomplement45949374595851Upstream
ABE-0014294lgoDCDSforward45959904597012Upstream
ABE-0285704repeat_regionforward45970974597135Upstream
ABE-0014297opgBCDScomplement45971504599441Upstream
ABE-0014301yjjACDScomplement45996954600189Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.