Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014294 (lgoD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014294 showshow history
Names
lgoD JW5793 ECK4348 yjjN b4358
Product
L-galactonate oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4595990 4597012 1023 341
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011597 (IPR011597 (DEPRECATED) GroES-related) Apr 2008
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Apr 2008
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Apr 2008
Automated Process Approved IPR002328 (IPR002328 Alcohol dehydrogenase, zinc-type, conserved site) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR020843 (IPR020843 Polyketide synthase, enoylreductase domain) Jul 2018
Automated Process Approved PF08240 (PF08240 Alcohol dehydrogenase GroES-like domain) Jul 2018
Automated Process Approved PF00107 (PF00107 Zinc-binding dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lgoD Published Annotation - PubMed ID: 26549308
Reference: Escherichia coli 		Apr 2020
Person Approved synonym yjjN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5793 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4348 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4358 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-galactonate oxidoreductase Experimental - PubMed ID: 24861318
Reference: Escherichia coli 		Apr 2020
Person Uncurated alternate product name putative dehydrogenase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative oxidoreductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name L-galactonate oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name predicted oxidoreductase, Zn-dependent and NAD(P)-binding Published Annotation - PubMed ID: 16397293 Apr 2020
Protein Family
Automated Process Approved protein family IPR011597 (DEPRECATED) GroES-related Protein Sequence Similarity - InterPro Domain: IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020843 Polyketide synthase, enoylreductase domain Protein Sequence Similarity - InterPro Domain: IPR020843
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00107 Zinc-binding dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00107
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08240 Alcohol dehydrogenase GroES-like domain Protein Sequence Similarity - PFAM Model Name: PF08240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.-.-.- Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:226510992 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39400 Published Annotation - Swiss-Prot Accession Number: P39400 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39400 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014294 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12590 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; L-galactonate catabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77314.4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013154, IPR013149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011597
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003796 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002882 yjjN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002989 yjjN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003893 yjjN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002468 lgoD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003489 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003837 tdh_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001206 tdh_2 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000910 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006854 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004741 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006629 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004472 yjjN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004353 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009806 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005918 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009455 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081653 lgoD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005045 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005773 yjjN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008647 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004961 yjjN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009386 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002884 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009192 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007705 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008209 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007593 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010701 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006576 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008512 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006872 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006066 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005681 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005341 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029532 yjjN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005510 lgoD_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009277 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0005097 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004455 yjjN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005149 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000395 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004927 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005079 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004739 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004894 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135439 yjjN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001371 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005073 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002960 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000464 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003083 yjjN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000899 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003907 yjjN CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000247 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011530 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000602 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288365 yjjN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006842 yjjN CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064720 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000763 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004497 CDS
Person Approved Go view Shigella boydii 227 ADV-0004820 yjjN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010315 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007738 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0076004 yjjN pseudogene
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004664 yjjN CDS
Person Approved Go view Shigella sonnei 046 ADD-0004897 yjjN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4590990 to 4602012
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014278btsTCDScomplement45891294591279Upstream
ABE-0014282tsrCDSforward45916574593312Upstream
ABE-0285703repeat_regionforward45933264593351Upstream
ABE-0014284lgoTCDScomplement45933614594722Upstream
ABE-0014287lgoRCDScomplement45949374595851Upstream
ABE-0014294lgoDCDSforward45959904597012Matches
ABE-0285704repeat_regionforward45970974597135Downstream
ABE-0014297opgBCDScomplement45971504599441Downstream
ABE-0014301yjjACDScomplement45996954600189Downstream
ABE-0014304dnaCCDScomplement46002384600975Downstream
ABE-0014306dnaTCDScomplement46009784601517Downstream
ABE-0014310yjjBCDScomplement46016244602097Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.