Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014326 (fhuF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014326 showshow history
Names
fhuF yjjS JW4331 ECK4357 b4367
Product
ferric iron reductase involved in ferric hydroximate transport
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4604875 4605663 789 263
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008090 (IPR008090 Ferric iron reductase) Apr 2008
Automated Process Approved IPR024726 (IPR024726 Ferric iron reductase, C-terminal) Jul 2018
Automated Process Approved IPR022770 (IPR022770 Ferric iron reductase FhuF domain) Jul 2018
Automated Process Approved PF11575 (PF11575 FhuF 2Fe-2S C-terminal domain) Jul 2018
Automated Process Approved PF06276 (PF06276 Ferric iron reductase FhuF-like transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051537 2 iron, 2 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR024726
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fhuF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW4331 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yjjS Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK4357 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4367 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product ferric iron reductase involved in ferric hydroximate transport Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name ferric hydroxamate transport protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR008090 Ferric iron reductase Protein Sequence Similarity - InterPro Domain: IPR008090
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF11575 FhuF 2Fe-2S C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF11575
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024726 Ferric iron reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR024726
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF06276 Ferric iron reductase FhuF-like transporter Protein Sequence Similarity - PFAM Model Name: PF06276
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022770 Ferric iron reductase FhuF domain Protein Sequence Similarity - InterPro Domain: IPR022770
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.57 (transport; substrate; ferric hydroxamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.8.A (transport; Accessory Factors Involved in Transport; Auxiliary transport proteins) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12595 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790829 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948891 Published Annotation - Entrez Gene Database ID: 948891
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39405 Published Annotation - Swiss-Prot Accession Number: P39405 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39405 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014326 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77323.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051537 2 iron, 2 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR024726
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003864 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002237 fhuF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002401 fhuF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007275 fhuF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002419 fhuF CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003574 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003824 fhuF CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005343 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000898 fhuF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004750 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006620 fhuF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004481 fhuF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004344 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009795 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007644 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081662 fhuF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005054 fhuF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005782 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010844 fhuF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010821 fhuF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004970 fhuF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009396 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002893 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009201 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007714 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008218 fhuF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010710 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009232 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008522 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006881 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006075 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010669 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005690 fhuF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005350 fhuF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029541 fhuF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009885 fhuF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009287 fhuF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0005106 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003994 fhuF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004464 fhuF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005158 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000386 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004918 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005089 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179313 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004748 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004904 fhuF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135448 fhuF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001380 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005082 fhuF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004871 fhuF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003013 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009029 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003183 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005201 fhuF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009202 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014219 fhuF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013438 fhuF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006886 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009311 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007604 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004282 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007270 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008374 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009251 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006114 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004399 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004359 fhuF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005750 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004625 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009337 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008864 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004192 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115207 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086319 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005474 fhuF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0103959 fhuF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004565 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007267 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005686 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266644 CDS
Person Approved Go view Shigella boydii 227 ADV-0004829 fhuF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010326 fhuF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008704 fhuF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005247 fhuF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076017 fhuF CDS
Person Approved Go view Shigella flexneri 301 ABT-0090611 fhuF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004676 fhuF CDS
Person Approved Go view Shigella sonnei 046 ADD-0004909 fhuF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002290 fhuF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000389 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007134 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002891 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237642 ysuF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007311 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001002 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005656 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001813 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120363 ysuF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005662 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004382 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000881 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008952 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004921 fhuF CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032374 ysuF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007774 fhuF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002947 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001732 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006588 fhuF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006432 fhuF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001612 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001959 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003020 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001881 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000231 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21784mutantTn5 InsertionRequest the StrainABE-0014326fhuFfhuF::Tn5KAN-I-SceI at position 434 in Plus orientation ,+ pKD460Blattner Laboratory
FB21849mutantTn5 InsertionRequest the StrainABE-0014326fhuFfhuF::Tn5KAN-I-SceI at position 434 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4599875 to 4610663
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014301yjjACDScomplement45996954600189Downstream
ABE-0014304dnaCCDScomplement46002384600975Downstream
ABE-0014306dnaTCDScomplement46009784601517Downstream
ABE-0014310yjjBCDScomplement46016244602097Downstream
ABE-0014313yjjPCDScomplement46020884602858Downstream
ABE-0014322yjjQCDSforward46034774604202Downstream
ABE-0014324bglJCDSforward46041604604837Downstream
ABE-0014326fhuFCDScomplement46048754605663Matches
ABE-0285088yjjZCDSforward46058044606040Upstream
ABE-0014329leuVtRNAcomplement46060794606165Upstream
ABE-0014331leuPtRNAcomplement46062004606286Upstream
ABE-0014333leuQtRNAcomplement46063154606401Upstream
ABE-0285705repeat_regionforward46065584606649Upstream
ABE-0014336rsmCCDScomplement46066694607700Upstream
ABE-0014340holDCDSforward46078034608216Upstream
ABE-0014342rimICDSforward46081854608631Upstream
ABE-0014344yjjGCDSforward46086464609323Upstream
ABE-0014346prfCCDSforward46094144611003Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.