Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014371 (deoC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014371 showshow history
Names
deoC ECK4373 JW4344 tlr thyR dra b4381
Product
deoxyribose-phosphate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4617323 4618102 780 260
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001667
EnteroFam0014371: Trusted threshold=682.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002915 (IPR002915 DeoC/FbaB/LacD aldolase) Apr 2008
Automated Process Approved IPR011343 (IPR011343 Deoxyribose-phosphate aldolase) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF01791 (PF01791 DeoC/LacD family aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009264 deoxyribonucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004139 deoxyribose-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name deoC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym thyR Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym tlr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK4373 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4344 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym dra Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b4381 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product deoxyribose-phosphate aldolase Published Annotation - EcoCyc Accession Number: EG10221
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 2-deoxyribose-5-phosphate aldolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014371: Trusted threshold=682.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001667
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01791 DeoC/LacD family aldolase Protein Sequence Similarity - PFAM Model Name: PF01791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002915 DeoC/FbaB/LacD aldolase Protein Sequence Similarity - InterPro Domain: IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011343 Deoxyribose-phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.1.2.4 Published Annotation - Swiss-Prot Accession Number: P0A6L0 Feb 2006
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10221 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790841 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6L0 Published Annotation - Swiss-Prot Accession Number: P0A6L0 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6L0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948902 Published Annotation - Entrez Gene Database ID: 948902
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0014371 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note 2-deoxyribose-5-phosphate aldolase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77334.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009264 deoxyribonucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004139 deoxyribose-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001667 deoC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001806 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000817 deoC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001129 deoC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000602 deoC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001428 deoC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002897 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001095 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003749 deoC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003558 deoC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003807 deoC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001236 deoC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008531 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018094 deoC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000644 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001027 deoC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297873 deoC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003190 deoC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000706 deoC2 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000881 deoC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008579 deoC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004766 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006603 deoC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004539 deoC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004329 deoC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009777 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008844 deoC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007661 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081684 deoC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005070 deoC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005800 deoC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009212 deoC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009519 deoC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004986 deoC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009415 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002909 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009217 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007730 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008234 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009085 deoC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010726 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009217 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008538 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008736 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006091 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008319 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005706 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005366 deoC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029554 deoC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008311 deoC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009303 deoC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004005 deoC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004480 deoC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005187 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000373 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004905 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005108 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179330 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004764 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004921 deoC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135462 deoC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001396 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005162 deoC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000187 deoC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001401 deoC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004887 deoC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003026 deoC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008326 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002514 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002783 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002603 deoC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001423 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003397 deoC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000803 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011060 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000160 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290416 deoC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006363 deoC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060959 deoC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000395 deoC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000186 deoC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005160 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137955 deoC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000995 deoC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009047 deoC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003164 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005220 deoC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009220 deoC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014266 deoC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013483 deoC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006869 deoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009328 deoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008134 deoC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004300 deoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004781 deoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008392 deoC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009268 deoC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006095 deoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004415 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004376 deoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005772 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004642 deoC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007406 deoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008882 deoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004208 deoC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115239 deoC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086336 deoC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005495 deoC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104008 deoC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004547 deoC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008283 deoC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004259 deoC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000061 deoC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264782 deoC CDS
Person Approved Go view Shigella boydii 227 ADV-0004846 deoC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010345 deoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006917 deoC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005264 deoC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076033 deoC CDS
Person Approved Go view Shigella flexneri 301 ABT-0090627 deoC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004691 deoC CDS
Person Approved Go view Shigella sonnei 046 ADD-0004927 deoC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001837 deoC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002443 VC2350 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006807 deoC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000046 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001734 deoC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002490 deoC2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002973 deoC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003398 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243295 deoC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004936 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004590 deoC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005855 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002879 deoC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116802 deoC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005276 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007591 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002254 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005733 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007302 deoC1 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033526 deoC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004686 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000393 deoC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003824 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006815 deoC1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007513 deoC1 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000623 deoC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000719 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004296 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001942 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000217 deoC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22986mutantTn5 InsertionRequest the StrainABE-0014371deoCdeoC::Tn5(KAN-I-SceI) at position 623 in Minus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4612323 to 4623102
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014351yjjUCDSforward46124114613484Upstream
ABE-0014356yjjVCDSforward46134814614260Upstream
ABE-0285706repeat_regionforward46142574614644Upstream
ABE-0014359yjjWCDScomplement46146804615543Upstream
ABE-0014361yjjICDScomplement46155154617065Upstream
ABE-0014371deoCCDSforward46173234618102Matches
ABE-0285707repeat_regionforward46181174618198Downstream
ABE-0014374deoACDSforward46182294619551Downstream
ABE-0014377deoBCDSforward46196034620826Downstream
ABE-0014379deoDCDSforward46208834621602Downstream
ABE-0014383yjjJCDSforward46217694623100Downstream
ABE-0014385lplACDScomplement46231014624117Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.