Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014377 (deoB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014377 showshow history
Names
deoB ECK4375 JW4346 tlr thyR drm b4383
Product
phosphopentomutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4619603 4620826 1224 408
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001668
EnteroFam0014377: Trusted threshold=1174.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013553 (IPR013553 (DEPRECATED) Phosphopentomutase N-terminal) Apr 2008
Automated Process Approved IPR006124 (IPR006124 Metalloenzyme) Apr 2008
Automated Process Approved IPR010045 (IPR010045 Phosphopentomutase) Apr 2008
Automated Process Approved IPR017850 (IPR017850 Alkaline-phosphatase-like, core domain superfamily) Jul 2018
Automated Process Approved IPR024052 (IPR024052 Phosphopentomutase DeoB cap domain superfamily) Jul 2018
Automated Process Approved PF01676 (PF01676 Metalloenzyme superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0043094 cellular metabolic compound salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008973 phosphopentomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name deoB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym thyR Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym drm Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym tlr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK4375 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4346 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4383 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphopentomutase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014377: Trusted threshold=1174.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001668
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR017850 Alkaline-phosphatase-like, core domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024052 Phosphopentomutase DeoB cap domain superfamily Protein Sequence Similarity - InterPro Domain: IPR024052
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010045 Phosphopentomutase Protein Sequence Similarity - InterPro Domain: IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013553 (DEPRECATED) Phosphopentomutase N-terminal Protein Sequence Similarity - InterPro Domain: IPR013553
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006124 Metalloenzyme Protein Sequence Similarity - InterPro Domain: IPR006124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01676 Metalloenzyme superfamily Protein Sequence Similarity - PFAM Model Name: PF01676
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.4.2.7 Published Annotation - Swiss-Prot Accession Number: P0A6K6 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790843 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014377 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10220 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6K6 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948910 Published Annotation - Entrez Gene Database ID: 948910
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A6K6 Published Annotation - Swiss-Prot Accession Number: P0A6K6 Jan 2006
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77336.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0043094 cellular metabolic compound salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008973 phosphopentomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001668 deoB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000434 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000535 deoB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000661 deoB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000184 deoB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001034 deoB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002899 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001093 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129812 deoB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105210 deoB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104657 deoB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003747 deoB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003556 deoB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003805 deoB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001238 deoB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008529 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018091 deoB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000646 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001029 deoB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297880 deoB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003187 deoB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000708 deoB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000879 deoB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008581 deoB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004768 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006601 deoB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004541 deoB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004327 deoB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009775 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008846 deoB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007663 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081686 deoB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005072 deoB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005802 deoB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009214 deoB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009521 deoB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004988 deoB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009417 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002911 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009219 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007732 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008236 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009083 deoB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010728 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009215 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008540 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008738 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006093 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008321 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005708 deoB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005368 deoB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029556 deoB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008309 deoB_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009305 deoB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004196 deoB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004482 deoB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005185 deoB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000371 deoB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004903 deoB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005110 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179332 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004766 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004923 deoB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135464 deoB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001398 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005164 deoB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000189 deoB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001404 deoB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004889 deoB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003028 deoB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008324 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002512 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002781 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002601 deoB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001425 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003395 deoB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000805 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011058 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000158 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290414 deoB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006361 deoB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060961 deoB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000369 deoB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000188 deoB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004283 deoB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005162 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137958 deoB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009049 deoB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003162 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005223 deoB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009222 deoB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014274 deoB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013490 deoB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006867 deoB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009330 deoB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008132 deoB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004302 deoB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004783 deoB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008394 deoB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009270 deoB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006093 deoB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004417 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004378 deoB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005774 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004644 deoB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007404 deoB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008884 deoB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004210 deoB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115244 deoB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086338 deoB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005497 deoB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104014 deoB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004545 deoB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008285 deoB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004261 deoB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000063 deoB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264784 deoB CDS
Person Approved Go view Shigella boydii 227 ADV-0004848 deoB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010347 deoB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006915 deoB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005266 deoB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076036 deoB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090629 deoB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004693 deoB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004929 deoB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001835 deoB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002441 VC2348 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006803 deoB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000048 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001740 b4383 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002488 deoB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002971 deoB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003396 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243293 deoB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004934 deoB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004587 deoB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005857 deoB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002878 deoB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116807 deoB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005274 deoB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007593 deoB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005735 deoB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007300 deoB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033524 deoB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004684 deoB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000396 deoB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003822 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006813 deoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007511 deoB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000625 deoB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000721 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004294 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001952 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000215 deoB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4614603 to 4625826
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285706repeat_regionforward46142574614644Upstream
ABE-0014359yjjWCDScomplement46146804615543Upstream
ABE-0014361yjjICDScomplement46155154617065Upstream
ABE-0014371deoCCDSforward46173234618102Upstream
ABE-0285707repeat_regionforward46181174618198Upstream
ABE-0014374deoACDSforward46182294619551Upstream
ABE-0014377deoBCDSforward46196034620826Matches
ABE-0014379deoDCDSforward46208834621602Downstream
ABE-0014383yjjJCDSforward46217694623100Downstream
ABE-0014385lplACDScomplement46231014624117Downstream
ABE-0014387ytjBCDScomplement46241454624789Downstream
ABE-0014393serBCDSforward46248954625863Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.