Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014379 (deoD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014379 showshow history
Names
deoD JW4347 ECK4376 pup b4384
Product
purine-nucleoside phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4620883 4621602 720 240
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001669
EnteroFam0014379: Trusted threshold=706.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Apr 2008
Automated Process Approved IPR004402 (IPR004402 Purine nucleoside phosphorylase DeoD-type) Apr 2008
Automated Process Approved IPR035994 (IPR035994 Nucleoside phosphorylase superfamily) Jul 2018
Automated Process Approved PF01048 (PF01048 Phosphorylase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004731 purine-nucleoside phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name deoD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4376 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4347 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pup Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b4384 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product purine-nucleoside phosphorylase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014379: Trusted threshold=706.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001669
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01048 Phosphorylase superfamily Protein Sequence Similarity - PFAM Model Name: PF01048
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004402 Purine nucleoside phosphorylase DeoD-type Protein Sequence Similarity - InterPro Domain: IPR004402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035994 Nucleoside phosphorylase superfamily Protein Sequence Similarity - InterPro Domain: IPR035994
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.2.1 Published Annotation - Swiss-Prot Accession Number: P0ABP8 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10222 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014379 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABP8 Published Annotation - Swiss-Prot Accession Number: P0ABP8 Jan 2006
Automated Process Approved db xref GI:1790844 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945654 Published Annotation - Entrez Gene Database ID: 945654
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABP8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77337.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004731 purine-nucleoside phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001669 deoD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000433 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000640 deoD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000766 deoD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000185 deoD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001345 deoD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002900 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001092 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129811 deoD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105209 deoD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104656 deoD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003746 deoD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003555 deoD CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003804 deoD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001239 deoD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008528 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018089 deoD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000647 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001030 deoD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297883 deoD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003186 deoD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000709 deoD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000878 deoD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008582 deoD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004769 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006600 deoD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004542 deoD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004326 deoD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009774 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008847 deoD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007664 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081687 deoD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005073 deoD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005803 deoD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009215 deoD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009522 deoD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004989 deoD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009418 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002912 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009220 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007733 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008237 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009082 deoD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010729 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009214 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008541 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008739 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006094 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008322 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005709 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005369 deoD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029557 deoD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008308 deoD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009306 deoD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000278 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004197 deoD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004483 deoD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005184 deoD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000370 deoD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004902 deoD CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005111 deoD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179333 deoD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004767 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004924 deoD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135465 deoD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001399 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005165 deoD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000190 deoD CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001405 deoD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004890 deoD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003029 deoD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008323 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002511 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002780 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002600 deoD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001426 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003394 deoD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000806 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011057 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000157 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290413 deoD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006360 deoD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060962 deoD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000391 deoD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000189 deoD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004284 deoD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005163 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137961 deoD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009050 deoD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003161 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005224 deoD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009223 deoD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014277 deoD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013493 deoD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006866 deoD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009331 deoD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008131 deoD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004303 deoD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004784 deoD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008395 deoD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009271 deoD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006091 deoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004418 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004379 deoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005776 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004645 deoD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007403 deoD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008885 deoD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004211 deoD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115246 deoD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086339 deoD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005498 deoD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104017 deoD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004544 deoD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008286 deoD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004262 deoD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000064 deoD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264786 deoD-2 CDS
Person Approved Go view Shigella boydii 227 ADV-0004849 deoD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010348 deoD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006914 deoD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005267 deoD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076037 deoD CDS
Person Approved Go view Shigella flexneri 301 ABT-0090630 deoD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004694 deoD CDS
Person Approved Go view Shigella sonnei 046 ADD-0004930 deoD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001834 deoD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002440 VC2347 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006802 deoD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000049 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001743 b4384 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002487 deoD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002970 deoD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003395 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243292 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004933 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004586 deoD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005858 deoD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002877 deoD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116809 deoD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005273 deoD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007594 deoD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001870 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005736 deoD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007299 deoD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033523 deoD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004683 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000397 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003821 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006812 deoD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007510 deoD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000626 deoD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000722 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004293 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001955 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000214 deoD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21790mutantTn5 InsertionRequest the StrainABE-0014379deoDdeoD::Tn5KAN-I-SceI at position 328 in Plus orientation ,+ pKD460Blattner Laboratory
FB21791mutantTn5 InsertionRequest the StrainABE-0014379deoDdeoD::Tn5KAN-I-SceI at position 328 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4615883 to 4626602
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014361yjjICDScomplement46155154617065Upstream
ABE-0014371deoCCDSforward46173234618102Upstream
ABE-0285707repeat_regionforward46181174618198Upstream
ABE-0014374deoACDSforward46182294619551Upstream
ABE-0014377deoBCDSforward46196034620826Upstream
ABE-0014379deoDCDSforward46208834621602Matches
ABE-0014383yjjJCDSforward46217694623100Downstream
ABE-0014385lplACDScomplement46231014624117Downstream
ABE-0014387ytjBCDScomplement46241454624789Downstream
ABE-0014393serBCDSforward46248954625863Downstream
ABE-0014395radACDSforward46259124627294Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.