Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014385 (lplA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014385 showshow history
Names
lplA yjjF JW4349 ECK4378 slr b4386
Product
lipoate:protein ligase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4623101 4624117 1017 339
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005107 (IPR005107 CO dehydrogenase flavoprotein, C-terminal) Apr 2008
Automated Process Approved IPR004143 (IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain) Apr 2008
Automated Process Approved IPR019491 (IPR019491 Lipoate protein ligase, C-terminal) Jul 2018
Automated Process Approved IPR004562 (IPR004562 Lipoyltransferase/lipoate-protein ligase) Jul 2018
Automated Process Approved IPR023741 (IPR023741 Lipoate-protein ligase A) Jul 2018
Automated Process Approved PF03099 (PF03099 Biotin/lipoate A/B protein ligase family) Jul 2018
Automated Process Approved PF10437 (PF10437 Bacterial lipoate protein ligase C-terminus) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042158 lipoprotein biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006464 cellular protein modification process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0009249 protein lipoylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004562, IPR023741
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016979 lipoate-protein ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023741
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lplA Published Sequence Analysis - PubMed ID: 8206909
Reference: Escherichia coli K-12 		Oct 2022
Person Approved synonym slr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym yjjF Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW4349 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4378 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4386 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product lipoate:protein ligase A Experimental - PubMed ID: 7639702
Reference: Escherichia coli K-12 		Oct 2022
Person Approved alternate product name lipoate-protein ligase A Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR019491 Lipoate protein ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR019491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03099 Biotin/lipoate A/B protein ligase family Protein Sequence Similarity - PFAM Model Name: PF03099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10437 Bacterial lipoate protein ligase C-terminus Protein Sequence Similarity - PFAM Model Name: PF10437
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Protein Sequence Similarity - InterPro Domain: IPR004143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004562 Lipoyltransferase/lipoate-protein ligase Protein Sequence Similarity - InterPro Domain: IPR004562
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005107 CO dehydrogenase flavoprotein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005107
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023741 Lipoate-protein ligase A Protein Sequence Similarity - InterPro Domain: IPR023741
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 6.3.1.20 Published Annotation - Swiss-Prot Accession Number: P32099
Reference: Escherichia coli K-12 MG1655 		Dec 2018
Automated Process Uncurated EC number 6.3.4.- Published Annotation - Database Name: EC2GO: GO:0016979
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.6.10 (metabolism; macromolecules (cellular constituent) biosynthesis; lipoprotein) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1790846 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944865 Published Annotation - Entrez Gene Database ID: 944865
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11796 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014385 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P32099 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P32099 Published Annotation - Swiss-Prot Accession Number: P32099 Jan 2005
Person Approved function enzyme; Macromolecule synthesis, modification: Lipoprotein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0042158 - lipoprotein biosynthetic process; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77339.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042158 lipoprotein biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006464 cellular protein modification process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009249 protein lipoylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004562, IPR023741
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016979 lipoate-protein ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023741
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002597 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002002 lplA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001943 lplA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001817 lplA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002080 lplA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002509 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003744 lplA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003553 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003803 lplA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001240 lplA CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020065 lplA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002469 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001031 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000876 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008584 lplA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004771 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006598 lplA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004544 lplA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004324 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009772 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008849 lplA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007666 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081691 lplA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005075 lplA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005805 lplA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009217 lplA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009524 lplA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004991 lplA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009420 lplA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008306 lplA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009308 lplA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000280 lplA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004199 lplA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004485 lplA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005183 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000368 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004900 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005113 lplA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004769 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004926 lplA CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285382 lplA pseudogene
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005167 lplA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002075 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002819 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004891 lplA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003030 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006296 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003910 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001018 lplA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0004074 lplA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004594 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0004222 lplA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004485 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009624 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002358 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0008174 lplA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004004 lplA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003801 lplA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007450 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009057 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003160 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005226 lplA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009225 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014284 lplA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013500 lplA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006859 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009338 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008124 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004309 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004791 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008402 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009278 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006084 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004420 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004381 lplA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005779 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004652 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007401 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008887 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004213 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115251 lplA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086341 lplA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005505 lplA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104032 lplA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004537 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008288 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004269 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003628 CDS
Person Approved Go view Shigella boydii 227 ADV-0004853 lplA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010350 lplA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006912 lplA CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0005271 lplA CDS
Person Approved Go view Shigella sonnei 046 ADD-0004931 lplA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001833 lplA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001460 VC1388 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000572 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006414 lplA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000880 lplA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000211 lplA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001492 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239543 lplA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006719 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002125 lplA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004903 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001050 lplA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123305 lplA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008312 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007771 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002298 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008886 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006154 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031623 lplA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008037 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002250 lplA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000873 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006955 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005699 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002409 lplA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002856 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002166 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001958 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000213 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23531mutantTn5 InsertionRequest the StrainABE-0014385lplAlplA::Tn5KAN-I-SceI at position 465 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4618101 to 4629117
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014371deoCCDSforward46173234618102Downstream
ABE-0285707repeat_regionforward46181174618198Downstream
ABE-0014374deoACDSforward46182294619551Downstream
ABE-0014377deoBCDSforward46196034620826Downstream
ABE-0014379deoDCDSforward46208834621602Downstream
ABE-0014383yjjJCDSforward46217694623100Downstream
ABE-0014385lplACDScomplement46231014624117Matches
ABE-0014387ytjBCDScomplement46241454624789Upstream
ABE-0014393serBCDSforward46248954625863Upstream
ABE-0014395radACDSforward46259124627294Upstream
ABE-0014397nadRCDSforward46273154628547Upstream
ABE-0285708repeat_regionforward46286954628844Upstream
ABE-0014400ettACDScomplement46288554630522Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.