Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014393 (serB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014393 showshow history
Names
serB JW4351 ECK4380 b4388
Product
3-phosphoserine phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4624895 4625863 969 323
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001670
EnteroFam0014393: Trusted threshold=830.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Apr 2008
Automated Process Approved IPR004469 (IPR004469 Phosphoserine phosphatase) Apr 2008
Automated Process Approved IPR006383 (IPR006383 (DEPRECATED) HAD-superfamily hydrolase, subfamily IB, PSPase-like) Apr 2008
Automated Process Approved IPR036412 (IPR036412 HAD-like superfamily) Jul 2018
Automated Process Approved PF12710 (PF12710 haloacid dehalogenase-like hydrolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006545 glycine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006383
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004647 phosphoserine phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name serB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4380 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4351 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4388 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-phosphoserine phosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014393: Trusted threshold=830.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001670
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF12710 haloacid dehalogenase-like hydrolase Protein Sequence Similarity - PFAM Model Name: PF12710
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006383 (DEPRECATED) HAD-superfamily hydrolase, subfamily IB, PSPase-like Protein Sequence Similarity - InterPro Domain: IPR006383
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036412 HAD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036412
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004469 Phosphoserine phosphatase Protein Sequence Similarity - InterPro Domain: IPR004469
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.3 Published Annotation - Swiss-Prot Accession Number: P0AGB0 Feb 2006
Person Uncurated MultiFun 1.5.1.11 (metabolism; building block biosynthesis; amino acids; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.10 (metabolism; building block biosynthesis; amino acids; glycine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014393 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10945 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGB0 Published Annotation - Swiss-Prot Accession Number: P0AGB0 Jan 2006
Automated Process Approved db xref GI:1790849 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948913 Published Annotation - Entrez Gene Database ID: 948913
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGB0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Serine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006545 - glycine biosynthetic process; GO_process: GO:0006564 - L-serine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77341.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006545 glycine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006383
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004647 phosphoserine phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001670 serB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001273 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000772 serB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000815 serB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000600 serB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000353 serB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000834 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004107 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003742 serB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003551 serB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003801 serB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001242 serB_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008689 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018604 serB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000503 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001033 serB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297893 serB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003183 serB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000712 serB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000874 serB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008586 serB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004773 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006596 serB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004546 serB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004322 serB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009769 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008851 serB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007668 serB pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081693 serB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005077 serB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005807 serB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009219 serB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009526 serB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004993 serB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009422 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002915 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009223 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007736 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008240 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009079 serB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010732 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009211 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008544 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008742 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006097 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008325 serB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005712 serB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005372 serB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029561 serB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008304 serB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009310 serB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000282 serB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004201 serB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004487 serB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005181 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000366 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004898 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005115 serB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179338 serB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004771 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004928 serB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135468 serB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001402 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005169 serB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000193 serB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000308 serB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004893 serB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003032 serB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008490 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003657 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004478 serB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003854 serB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004289 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000649 serB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003660 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008348 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004089 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289193 serB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003802 serB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060681 serB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000306 serB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000150 serB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002894 serB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004985 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138024 serB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009060 serB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003158 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005229 serB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009228 serB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014289 serB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013505 serB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006856 serB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009341 serB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008121 serB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004312 serB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004794 serB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008405 serB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009281 serB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006081 serB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004422 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004383 serB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005781 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004655 serB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007398 serB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008890 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004216 serB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115253 serB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086343 serB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005507 serB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104039 serB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004534 serB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008291 serB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004272 serB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000066 serB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264788 serB CDS
Person Approved Go view Shigella boydii 227 ADV-0004855 serB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010352 serB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006910 serB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005273 serB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076041 serB CDS
Person Approved Go view Shigella flexneri 301 ABT-0090633 serB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004698 serB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004933 serB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001831 serB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002438 VC2345 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006700 serB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000052 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001751 b4388 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002485 serB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002967 serB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003392 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243287 serB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004931 serB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004583 serB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005860 serB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002875 serB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116815 serB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005271 serB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007596 serB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001872 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005738 serB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007297 serB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033521 serB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004681 serB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000400 serB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003818 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006810 serB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007508 serB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000628 serB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000725 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004290 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001964 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000211 serB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4619895 to 4630863
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014377deoBCDSforward46196034620826Upstream
ABE-0014379deoDCDSforward46208834621602Upstream
ABE-0014383yjjJCDSforward46217694623100Upstream
ABE-0014385lplACDScomplement46231014624117Upstream
ABE-0014387ytjBCDScomplement46241454624789Upstream
ABE-0014393serBCDSforward46248954625863Matches
ABE-0014395radACDSforward46259124627294Downstream
ABE-0014397nadRCDSforward46273154628547Downstream
ABE-0285708repeat_regionforward46286954628844Downstream
ABE-0014400ettACDScomplement46288554630522Downstream
ABE-0014404sltCDSforward46307334632670Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.