Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014397 (nadR) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014397 showshow history
Names
nadR pnuA nadI JW5800 ECK4382 b4390
Product
NadR transcriptional repressor/ribosylnicotinamide kinase/NMN adenylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4627315 4628547 1233 411
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001672
EnteroFam0014397: Trusted threshold=1200.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004821 (IPR004821 Cytidyltransferase-like domain) Apr 2008
Automated Process Approved IPR001387 (IPR001387 Cro/C1-type helix-turn-helix domain) Apr 2008
Automated Process Approved IPR006417 (IPR006417 Nicotinamide-nucleotide adenylyltransferase) Apr 2008
Automated Process Approved IPR010982 (IPR010982 Lambda repressor-like, DNA-binding domain superfamily) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR038727 (IPR038727 NadR/Ttd14, AAA domain) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF01381 (PF01381 Helix-turn-helix) Jul 2018
Automated Process Approved PF13521 (PF13521 AAA domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019363 pyridine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045449 (DEPRECATED) regulation of transcription GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Direct Assay - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030528 (OBSOLETE) transcription regulator activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043565 sequence-specific DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001387
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0000309 nicotinamide-nucleotide adenylyltransferase activity GO Inferred from Direct Assay - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated GO molecular function GO:0016564 (OBSOLETE) transcription repressor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nadR Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4382 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5800 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pnuA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym nadI Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b4390 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NadR transcriptional repressor/ribosylnicotinamide kinase/NMN adenylyltransferase Experimental - PubMed ID: 12446641
Reference: Salmonella Typhimurium 		Oct 2021
Automated Process Approved alternate product name trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0014397: Trusted threshold=1200.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001672
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR038727 NadR/Ttd14, AAA domain Protein Sequence Similarity - InterPro Domain: IPR038727
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006417 Nicotinamide-nucleotide adenylyltransferase Protein Sequence Similarity - InterPro Domain: IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13521 AAA domain Protein Sequence Similarity - PFAM Model Name: PF13521
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01381 Helix-turn-helix Protein Sequence Similarity - PFAM Model Name: PF01381
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010982 Lambda repressor-like, DNA-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR010982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001387 Cro/C1-type helix-turn-helix domain Protein Sequence Similarity - InterPro Domain: IPR001387
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004821 Cytidyltransferase-like domain Protein Sequence Similarity - InterPro Domain: IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.7.1 Experimental - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Person Uncurated MultiFun 3.1.2.3 (regulation; type of regulation; transcriptional level; repressor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.7 (metabolism; building block biosynthesis; cofactor, small molecule carrier; nicotinamide adenine dinucleotide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.2.2 (information transfer; RNA related; transcription related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.3.1 (regulation; genetic unit regulated; operon) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment Divalent metal cations are required for NMN adenlytransferase activity. This was demonstrated for Ni2+, Co2+, Cd2+, Cu2+, Zn2+, Ca2+, Mg2+, and Mn2+. Experimental - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved db xref EcoGene:EG11335 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948911 Published Annotation - Entrez Gene Database ID: 948911
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P27278 Published Annotation - Swiss-Prot Accession Number: P27278 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P27278 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082440 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014397 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function regulator; Biosynthesis of cofactors, carriers: Pyridine nucleotide Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function biosynthesizes NAD by catalyzing the transfer of the adenylyl moiety from ATP to nicotinamide mononucleotide (NMN) Experimental - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved note probable nadAB transcriptional regulator; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0009435 - NAD biosynthetic process; GO_process: GO:0006350 - transcription Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77343.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045449 (DEPRECATED) regulation of transcription GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0019363 pyridine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Direct Assay - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO molecular function GO:0000309 nicotinamide-nucleotide adenylyltransferase activity GO Inferred from Direct Assay - PubMed ID: 10464228
Reference: Escherichia coli K-12 MG1655 		Jan 2007
Automated Process Approved GO molecular function GO:0030528 (OBSOLETE) transcription regulator activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006417
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043565 sequence-specific DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001387
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0016564 (OBSOLETE) transcription repressor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001672 nadR CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001271 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001552 nadR CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001516 nadR CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000183 nadR CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001696 nadR CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000832 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004105 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003740 nadR CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003549 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003799 nadR CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001244 nadR CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008691 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018606 nadR CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000501 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001035 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297899 nadR CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003181 nadR CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000714 nadR CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000872 nadR CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008588 nadR CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004775 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006594 nadR CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004548 nadR CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004320 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009767 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008853 nadR CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007670 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081695 nadR CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005079 nadR CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005809 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009221 nadR CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009528 nadR CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004995 nadR CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009424 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002917 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009225 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007738 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008242 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009077 nadR CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010734 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009209 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008546 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008744 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006099 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008327 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005714 nadR CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005374 nadR CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029563 nadR CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008302 nadR_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009312 nadR CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004203 nadR CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004489 nadR CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005179 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000364 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004896 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005117 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004773 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004930 nadR CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135470 nadR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001404 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005171 nadR CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000195 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000310 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004895 nadR CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003034 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008492 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003659 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004480 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003856 nadR CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004287 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000651 nadR CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003658 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008350 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004091 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289195 nadR CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003804 nadR CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060679 nadR CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000308 nadR CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000148 nadR CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002892 nadR CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004983 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138029 nadR CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009062 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003156 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005231 nadR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009230 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014294 nadR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013510 nadR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006854 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009343 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008119 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004314 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004796 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008407 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009283 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006079 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004424 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004385 nadR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005783 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004657 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007396 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008892 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004218 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115256 nadR CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086345 nadR CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005509 nadR CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104045 nadR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004532 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008293 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004274 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000068 CDS
Person Approved Go view Shigella boydii 227 ADV-0004857 nadR CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010354 nadR CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006908 nadR CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005275 nadR CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076043 nadR CDS
Person Approved Go view Shigella flexneri 301 ABT-0090635 nadR CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004700 nadR CDS
Person Approved Go view Shigella sonnei 046 ADD-0004935 nadR CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001829 nadR CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001135 nadR CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000054 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001755 b4390 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002483 b4390 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002965 nadR CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003534 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243285 nadR CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004929 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004581 nadR CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005862 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002873 nadR CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116818 nadR CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005269 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007598 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005740 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007295 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004679 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000402 nadR CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003816 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006808 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007506 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000630 nadR CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000727 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004288 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001975 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000209 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22989mutantTn5 InsertionRequest the StrainABE-0014397nadRnadR::Tn5(KAN-I-SceI) at position 584 in Minus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4622315 to 4633547
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014383yjjJCDSforward46217694623100Upstream
ABE-0014385lplACDScomplement46231014624117Upstream
ABE-0014387ytjBCDScomplement46241454624789Upstream
ABE-0014393serBCDSforward46248954625863Upstream
ABE-0014395radACDSforward46259124627294Upstream
ABE-0014397nadRCDSforward46273154628547Matches
ABE-0285708repeat_regionforward46286954628844Downstream
ABE-0014400ettACDScomplement46288554630522Downstream
ABE-0014404sltCDSforward46307334632670Downstream
ABE-0014408trpRCDSforward46327604633086Downstream
ABE-0285709repeat_regionforward46330914633230Downstream
ABE-0014411yjjXCDScomplement46332334633745Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.