Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014404 (slt) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014404 showshow history
Names
slt sltY JW4355 ECK4384 b4392
Product
soluble lytic murein transglycosylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4630733 4632670 1938 646
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001673
EnteroFam0014404: Trusted threshold=1535.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008258 (IPR008258 Transglycosylase SLT domain 1) Apr 2008
Automated Process Approved IPR008939 (IPR008939 Lytic transglycosylase, superhelical U-shaped) Apr 2008
Automated Process Approved IPR012289 (IPR012289 Lytic transglycosylase, superhelical linker) Apr 2008
Automated Process Approved IPR000189 (IPR000189 Prokaryotic transglycosylase, active site) Apr 2008
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF14718 (PF14718 Soluble lytic murein transglycosylase L domain) Jul 2018
Automated Process Approved PF01464 (PF01464 Transglycosylase SLT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008939
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008939
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name slt Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK4384 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sltY Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW4355 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4392 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product soluble lytic murein transglycosylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name Slt70 Published Annotation - PubMed ID: 10452894
Reference: Escherichia coli K-12 W3110 		Mar 2008
Person Approved alternate product name soluble lytic murein transglycosylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014404: Trusted threshold=1535.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001673
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000189 Prokaryotic transglycosylase, active site Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008939 Lytic transglycosylase, superhelical U-shaped Protein Sequence Similarity - InterPro Domain: IPR008939
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008258 Transglycosylase SLT domain 1 Protein Sequence Similarity - InterPro Domain: IPR008258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012289 Lytic transglycosylase, superhelical linker Protein Sequence Similarity - InterPro Domain: IPR012289
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF14718 Soluble lytic murein transglycosylase L domain Protein Sequence Similarity - PFAM Model Name: PF14718
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01464 Transglycosylase SLT domain Protein Sequence Similarity - PFAM Model Name: PF01464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.1.- Published Annotation - Swiss-Prot Accession Number: P0AGC3 Feb 2006
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGC3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082441 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGC3 Published Annotation - Swiss-Prot Accession Number: P0AGC3 Jan 2006
Automated Process Approved db xref EcoGene:EG10950 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948908 Published Annotation - Entrez Gene Database ID: 948908
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0014404 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note soluble lytic murein transglycosylase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77345.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008939
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008939
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001673 slt CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001652 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000767 slt CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000886 slt CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001362 slt CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000446 slt CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003737 slt CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003547 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000832 slt CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001246 slt_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005001 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015166 slt CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003705 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001040 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297936 slt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003169 slt CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000730 slt CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000870 slt CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008591 slt CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004779 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006591 slt CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004552 slt CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004315 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009764 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008855 slt CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007674 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081699 slt CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005082 slt CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0005813 slt CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009224 slt CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009531 slt CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004999 slt CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009426 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002920 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009228 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007741 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008245 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009074 slt CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010737 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009206 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008549 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008747 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006102 slt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008330 slt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005717 slt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005377 slt CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029565 slt CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008297 slt CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009315 slt CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000288 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004205 slt CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004491 slt CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005176 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000361 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004893 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005119 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179345 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004776 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004934 slt CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135472 slt CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001407 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005175 slt CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000199 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004897 slt CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003036 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005009 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003677 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004498 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003882 slt CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004256 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000678 slt CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003630 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008365 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004107 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287634 slt CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003820 slt CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064217 slt CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002246 slt CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001006 slt CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002275 slt CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008888 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138038 slt CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009064 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003154 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005233 slt CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009232 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014304 slt CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013520 slt CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006852 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009345 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008117 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004316 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004798 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008409 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009285 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006077 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004426 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004387 slt CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005785 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004659 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007394 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008894 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004220 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115266 slt CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0086347 slt CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005511 slt CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104049 slt CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004530 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008295 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004276 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000076 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265620 CDS
Person Approved Go view Shigella boydii 227 ADV-0004859 slt CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010357 slt CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006906 slt CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005277 slt CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076046 slt CDS
Person Approved Go view Shigella flexneri 301 ABT-0090637 slt CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004702 slt CDS
Person Approved Go view Shigella sonnei 046 ADD-0004937 slt CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001827 slt CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001143 slt CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000063 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001793 slt CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003933 slt CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003525 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243264 slt CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004922 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004820 slt CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005869 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002868 slt CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116856 slt CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005262 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007605 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001557 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005747 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007288 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033509 slt CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004672 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000412 slt CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003805 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007781 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007499 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000637 slt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000736 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004278 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001991 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000207 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21795mutantTn5 InsertionRequest the StrainABE-0014404sltslt::Tn5KAN-I-SceI at position 639 in Plus orientation ,+ pKD460Blattner Laboratory
FB21796mutantTn5 InsertionRequest the StrainABE-0014404sltslt::Tn5KAN-I-SceI at position 639 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4625733 to 4637670
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014393serBCDSforward46248954625863Upstream
ABE-0014395radACDSforward46259124627294Upstream
ABE-0014397nadRCDSforward46273154628547Upstream
ABE-0285708repeat_regionforward46286954628844Upstream
ABE-0014400ettACDScomplement46288554630522Upstream
ABE-0014404sltCDSforward46307334632670Matches
ABE-0014408trpRCDSforward46327604633086Downstream
ABE-0285709repeat_regionforward46330914633230Downstream
ABE-0014411yjjXCDScomplement46332334633745Downstream
ABE-0014416ytjCCDSforward46337974634444Downstream
ABE-0014420robCDScomplement46344414635310Downstream
ABE-0014426creACDSforward46355214635994Downstream
ABE-0014428creBCDSforward46360074636696Downstream
ABE-0014430creCCDSforward46366964638120Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.