Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014411 (yjjX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014411 showshow history
Names
yjjX JW5801 ECK4386 b4394
Product
inosine/xanthosine triphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4633233 4633745 513 171
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002786 (IPR002786 Inosine/xanthosine triphosphatase) Apr 2008
Automated Process Approved IPR026533 (IPR026533 Non-canonical purine NTP phosphatase/PRRC1) Jul 2018
Automated Process Approved IPR029001 (IPR029001 Inosine triphosphate pyrophosphatase-like) Jul 2018
Automated Process Approved PF01931 (PF01931 Protein of unknown function DUF84) Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yjjX Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5801 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK4386 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4394 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product inosine/xanthosine triphosphatase Experimental - PubMed ID: 16216582
Reference: Escherichia coli 		Dec 2018
Person Approved alternate product name thiamin metabolism associated protein Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR002786 Inosine/xanthosine triphosphatase Protein Sequence Similarity - InterPro Domain: IPR002786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01931 Protein of unknown function DUF84 Protein Sequence Similarity - PFAM Model Name: PF01931
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR026533 Non-canonical purine NTP phosphatase/PRRC1 Protein Sequence Similarity - InterPro Domain: IPR026533
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029001 Inosine triphosphate pyrophosphatase-like Protein Sequence Similarity - InterPro Domain: IPR029001
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12600 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014411 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948919 Published Annotation - Entrez Gene Database ID: 948919
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P39411 Published Annotation - Swiss-Prot Accession Number: P39411 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39411 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082442 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77347.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001985 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001497 yjjX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001429 yjjX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001552 yjjX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001407 yjjX CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003735 yjjX CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003545 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000834 yjjX CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0001248 yjjX CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005004 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015164 yjjX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003703 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001042 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297942 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003167 yjjX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000732 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000868 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008593 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004781 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006589 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004554 yjjX CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004313 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009762 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008857 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007676 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081701 yjjX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005084 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009226 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009533 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0005001 yjjX CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009428 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002922 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009230 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007743 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008247 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009072 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010739 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009204 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008551 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008749 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006104 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008332 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005719 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005379 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029567 yjjX CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008295 yjjX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009317 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004207 yjjX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004493 yjjX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000359 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004778 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004936 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135474 yjjX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001409 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005177 yjjX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000201 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004899 yjjX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003038 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005012 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003679 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004500 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003884 yjjX CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004254 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000680 yjjX CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003628 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008367 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004109 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287636 yjjX CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003822 yjjX CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064215 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003449 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004222 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002273 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008886 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138041 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009066 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003152 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005236 yjjX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009234 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014309 yjjX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013526 yjjX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006850 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009347 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008115 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004318 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004800 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008411 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009287 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006075 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004428 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004389 yjjX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005787 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004661 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007392 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008896 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004222 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005513 yjjX CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104056 yjjX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004528 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008297 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004278 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000078 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264472 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0004861 yjjX CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010359 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006904 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005279 yjjX CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0076049 yjjX pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0090639 yjjX pseudogene
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004704 yjjX CDS
Person Approved Go view Shigella sonnei 046 ADD-0004939 yjjX CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001825 yjjX CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000761 VC0702 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001147 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000066 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001800 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000266 yjjX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003260 yjjX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001826 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243261 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004920 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004823 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005871 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002866 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116862 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005260 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007607 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001559 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005749 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007286 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033507 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004670 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000415 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003803 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007783 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007497 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000639 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000739 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004276 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0001998 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4628233 to 4638745
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0014397nadRCDSforward46273154628547Downstream
ABE-0285708repeat_regionforward46286954628844Downstream
ABE-0014400ettACDScomplement46288554630522Downstream
ABE-0014404sltCDSforward46307334632670Downstream
ABE-0014408trpRCDSforward46327604633086Downstream
ABE-0285709repeat_regionforward46330914633230Downstream
ABE-0014411yjjXCDScomplement46332334633745Matches
ABE-0014416ytjCCDSforward46337974634444Upstream
ABE-0014420robCDScomplement46344414635310Upstream
ABE-0014426creACDSforward46355214635994Upstream
ABE-0014428creBCDSforward46360074636696Upstream
ABE-0014430creCCDSforward46366964638120Upstream
ABE-0014432creDCDSforward46381784639530Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.