Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0014416 (ytjC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0014416 showshow history
Names
ytjC gpmB JW4358 ECK4387 b4395
Product
phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4633797 4634444 648 216
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001675
EnteroFam0014416: Trusted threshold=552.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013078 (IPR013078 Histidine phosphatase superfamily, clade-1) Apr 2008
Automated Process Approved IPR001345 (IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site) Apr 2008
Automated Process Approved IPR029033 (IPR029033 Histidine phosphatase superfamily) Jul 2018
Automated Process Approved PF00300 (PF00300 Histidine phosphatase superfamily (branch 1)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ytjC Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gpmB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK4387 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW4358 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4395 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phosphatase Experimental - PubMed ID: 21332126
Reference: Escherichia coli K-12 DH1 		Jul 2018
Person Uncurated alternate product name phosphoglyceromutase 2, co-factor independent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated alternate product name putative phosphoglyceromutase 2 Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0014416: Trusted threshold=552.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001675
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR029033 Histidine phosphatase superfamily Protein Sequence Similarity - InterPro Domain: IPR029033
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Protein Sequence Similarity - InterPro Domain: IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013078 Histidine phosphatase superfamily, clade-1 Protein Sequence Similarity - InterPro Domain: IPR013078
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00300 Histidine phosphatase superfamily (branch 1) Protein Sequence Similarity - PFAM Model Name: PF00300
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 5.4.2.- Published Annotation - Swiss-Prot Accession Number: P0A7A2
Reference: Escherichia coli K-12 		Mar 2014
Person Uncurated MultiFun 1.7.8 (metabolism; central intermediary metabolism; gluconeogenesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment gpmB nomenclature was prematurely assigned based on N-terminal homology to the gpm genes and is no longer appropriate Published Annotation in EcoGene - EG Number: EG12164
Reference: Escherichia coli K-12 MG1655 		Dec 2006
Automated Process Approved db xref GI:1790856 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7A2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0014416 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948918 Published Annotation - Entrez Gene Database ID: 948918
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A7A2 Published Annotation - Swiss-Prot Accession Number: P0A7A2 Jan 2006
Automated Process Approved db xref EcoGene:EG12164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note phosphoglyceromutase 2; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006096 - glycolysis; GO_process: GO:0006094 - gluconeogenesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC77348.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006094 gluconeogenesis Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001675 ytjC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001654 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001498 ytjC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001520 ytjC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000901 ytjC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001559 ytjC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003022 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003682 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003734 gpmB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003544 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000835 cobC_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0001249 cobC_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005005 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015163 ytjC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003702 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0001043 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297944 gpmB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003166 gpmB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000733 gpmB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000867 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008594 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0004782 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006588 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0004555 gpmB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0004312 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0009761 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008858 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007677 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081702 ytjC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0005085 gpmB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000035 ytjC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009227 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009534 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0009429 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002923 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009231 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007744 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008248 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009071 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0010740 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009203 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008552 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008750 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006105 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008333 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005720 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005380 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0029568 ytjC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008294 pspB_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0009318 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0000291 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004208 ytjC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004494 ytjC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0005173 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0000358 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004890 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0005122 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0179348 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004779 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004937 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0135475 ytjC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001410 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005178 gpmB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000202 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000320 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004900 gpmB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0003039 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005013 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003680 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004501 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003885 gpmB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004253 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000681 gpmB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003627 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008368 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0004111 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287637 ytjC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0003823 gpmB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064214 ytjC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002269 gpmB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001004 gpmB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002272 ytjC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008885 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138043 gpmB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009067 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003151 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005237 ytjC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009235 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014311 gpmB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013528 gpmB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006849 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009348 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008114 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004319 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004801 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008412 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009288 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006074 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004429 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0004390 ytjC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005788 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004662 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007391 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008897 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004223 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0115273 ytjC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0086350 ytjC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0005514 gpmB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0104059 ytjC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004527 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008298 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004279 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000079 CDS
Person Approved Go view Shigella boydii 227 ADV-0004862 gpmB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0010360 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006903 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005280 gpmB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0076050 ytjC CDS
Person Approved Go view Shigella flexneri 301 ABT-0256182 ytjC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0004705 gpmB CDS
Person Approved Go view Shigella sonnei 046 ADD-0004940 ytjC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001824 gpmB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001150 ytjC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000067 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001802 gpmB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000265 gpmB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003259 ytjC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001825 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243260 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004919 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004824 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005872 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002865 ytjC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116864 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005259 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007608 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001560 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005750 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007285 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033506 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004669 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000416 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003802 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007784 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007496 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000640 ytjC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000740 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004275 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002000 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0000204 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21799mutantTn5 InsertionRequest the StrainABE-0014416ytjCgpmB::Tn5KAN-I-SceI at position 95 in Plus orientation ,- pKD465Blattner Laboratory
FB21800mutantTn5 InsertionRequest the StrainABE-0014416ytjCgpmB::Tn5KAN-I-SceI at position 95 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4628797 to 4639444
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285708repeat_regionforward46286954628844Upstream
ABE-0014400ettACDScomplement46288554630522Upstream
ABE-0014404sltCDSforward46307334632670Upstream
ABE-0014408trpRCDSforward46327604633086Upstream
ABE-0285709repeat_regionforward46330914633230Upstream
ABE-0014411yjjXCDScomplement46332334633745Upstream
ABE-0014416ytjCCDSforward46337974634444Matches
ABE-0014420robCDScomplement46344414635310Overlaps Downstream
ABE-0014426creACDSforward46355214635994Downstream
ABE-0014428creBCDSforward46360074636696Downstream
ABE-0014430creCCDSforward46366964638120Downstream
ABE-0014432creDCDSforward46381784639530Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.