Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174097 (glcF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174097 showshow history
Names
glcF yghL gox JW5486 ECK2972 b4467
Product
glycolate oxidase iron-sulfur subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3124236 3125459 1224 408
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012285 (IPR012285 (DEPRECATED) Fumarate reductase, C-terminal) Apr 2008
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR012257 (IPR012257 Glycolate oxidase, iron-sulphur subunit) Apr 2008
Automated Process Approved IPR009051 (IPR009051 Alpha-helical ferredoxin) Apr 2008
Automated Process Approved IPR004017 (IPR004017 Cysteine-rich domain) Apr 2008
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved PF13183 (PF13183 4Fe-4S dicluster domain) Jul 2018
Automated Process Approved PF02754 (PF02754 Cysteine-rich domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glcF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved synonym ECK2972 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yghL Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym gox Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5486 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4467 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycolate oxidase iron-sulfur subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name glycolate oxidase 4Fe-4S iron-sulfur cluster subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name glycolate oxidase iron-sulfur subunit Published Annotation - GenBank Accession Number: U00096 Jan 2006
Protein Family
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012285 (DEPRECATED) Fumarate reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012257 Glycolate oxidase, iron-sulphur subunit Protein Sequence Similarity - InterPro Domain: IPR012257
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02754 Cysteine-rich domain Protein Sequence Similarity - PFAM Model Name: PF02754
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004017 Cysteine-rich domain Protein Sequence Similarity - InterPro Domain: IPR004017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13183 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF13183
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009051 Alpha-helical ferredoxin Protein Sequence Similarity - InterPro Domain: IPR009051
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.-.-.- Protein Sequence Similarity - InterPro Domain: IPR012285
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Approved MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994913 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P52074 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847717 Published Annotation - Entrez Gene Database ID: 2847717
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P52074 Published Annotation - Swiss-Prot Accession Number: P52074 Jan 2006
Automated Process Approved db xref EcoGene:EG13291 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0174097 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.7.1 metabolism; central intermediary metabolism; unassigned reversible reactions Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Automated Process Approved protein id AAT48157.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, splitting glcF (b2978) into glcE and glcF Experimental - GenBank Accession Number: AG613255
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004971 glcF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005970 glcF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004065 glcF CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002546 glcF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005790 glcF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003085 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008149 glcF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005350 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001219 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006185 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010218 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079878 glcF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003424 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004031 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005683 glcF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005510 glcF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003474 glcF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007871 glcF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006794 lutA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007832 glcF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003486 glcF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004022 glcF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003048 glcF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003619 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003401 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003569 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003422 glcF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003317 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003253 glcF CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0005418 glcF CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0285933 glcF pseudogene
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3119236 to 3130459
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285566repeat_regionforward31195613119587Downstream
ABE-0009763glcACDScomplement31195973121279Downstream
ABE-0009767glcBCDScomplement31216343123805Downstream
ABE-0009769glcGCDScomplement31238273124231Downstream
ABE-0174097glcFCDScomplement31242363125459Matches
ABE-0174098glcECDScomplement31254703126522Upstream
ABE-0009773glcDCDScomplement31265223128021Upstream
ABE-0009777glcCCDSforward31282723129036Upstream
ABE-0009779yghOpseudogenecomplement31290433130145Upstream
ABE-0009781is_elementcomplement31301463131340Upstream
ABE-0285567mobile_elementforward31301463131340Upstream
ABE-0009783insH9CDSforward31302143131194Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.