Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174101 (tdcG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174101 showshow history
Names
tdcG yhaQ ECK3101 JW5520 tdcGb tdcG_1 tdcG_2 tdcGa yhaP b4471
Product
L-serine dehydratase 3
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3258285 3259649 1365 455
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004644 (IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form) Apr 2008
Automated Process Approved IPR005131 (IPR005131 Serine dehydratase beta chain) Apr 2008
Automated Process Approved IPR005130 (IPR005130 Serine dehydratase-like, alpha subunit) Apr 2008
Automated Process Approved IPR029009 (IPR029009 Allosteric substrate binding domain superfamily) Jul 2018
Automated Process Approved PF03313 (PF03313 Serine dehydratase alpha chain) Jul 2018
Automated Process Approved PF03315 (PF03315 Serine dehydratase beta chain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005131
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003941 L-serine ammonia-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tdcG Experimental - PubMed ID: 9484901
Reference: Escherichia coli 		May 2004
Person Approved synonym tdcG_1 Experimental - PubMed ID: 9484901
Reference: Escherichia coli 		Apr 2004
Person Approved synonym tdcGb Published Annotation - Database Name: GenProtEC Apr 2004
Person Approved synonym ECK3101 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5520 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhaP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved synonym yhaQ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved synonym tdcG_2 Experimental - PubMed ID: 9484901
Reference: Escherichia coli 		Apr 2004
Person Approved synonym tdcGa Published Annotation - Database Name: GenProtEC Apr 2004
Person Approved locus tag b4471 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-serine dehydratase 3 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name L-serine dehydratase Experimental - PubMed ID: 9484901
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form Protein Sequence Similarity - InterPro Domain: IPR004644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005131 Serine dehydratase beta chain Protein Sequence Similarity - InterPro Domain: IPR005131
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005130 Serine dehydratase-like, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR005130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03313 Serine dehydratase alpha chain Protein Sequence Similarity - PFAM Model Name: PF03313
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03315 Serine dehydratase beta chain Protein Sequence Similarity - PFAM Model Name: PF03315
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029009 Allosteric substrate binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029009
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.3.1.17 Published Annotation - Swiss-Prot Accession Number: P42630 Feb 2006
Person Approved MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0174101 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847724 Published Annotation - Entrez Gene Database ID: 2847724
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P42630 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P42630 Published Annotation - Swiss-Prot Accession Number: P42630 Jan 2006
Automated Process Approved db xref GI:48994925 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12756 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.1.3 metabolism; carbon utilization; amino acids Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note L-serine dehydratase; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48169.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, merging tdcG_1 (b3112) and tdcG_2 (b3111) Experimental - GenBank Accession Number: AG613271
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005131
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003941 L-serine ammonia-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000013 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000013 tdcG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000011 tdcG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000004 tdcG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000005 tdcG CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000636 tdcG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004741 tdcG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003235 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003186 tdcG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001072 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006017 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080042 tdcG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003579 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004204 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003625 tdcG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008020 tdcG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009261 tdcG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028137 tdcG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007278 tdcG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007984 sdaA1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003634 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004026 tdcG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003180 tdcG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003759 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003681 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003417 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003583 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177745 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003459 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003406 tdcG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134050 tdcG CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003556 tdcG CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003721 tdcG CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003108 tdcG CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0112221 tdcG CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084879 tdcG CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100067 tdcG CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003267 tdcG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008659 tdcG CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003764 yhaP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074558 tdcG CDS
Person Approved Go view Shigella flexneri 301 ABT-0089393 tdcG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003358 yhaP CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0003572 tdcG CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001991 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3253285 to 3264649
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010213yhaJCDScomplement32533183254214Downstream
ABE-0010217yhaKCDSforward32543193255020Downstream
ABE-0010219yhaLCDSforward32550433255207Downstream
ABE-0285584repeat_regionforward32552173255319Downstream
ABE-0174100cyuACDScomplement32553413256651Downstream
ABE-0010228cyuPCDScomplement32566793258010Downstream
ABE-0174101tdcGCDScomplement32582853259649Matches
ABE-0010240tdcFCDScomplement32597213260110Upstream
ABE-0010242tdcECDScomplement32601243262418Upstream
ABE-0010245tdcDCDScomplement32624523263660Upstream
ABE-0010247tdcCCDScomplement32636863265017Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.