Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174105 (gntU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174105 showshow history
Names
gntU JW5686 ECK3421 gntU_1 gntU_2 b4476
Product
low-affinity gluconate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3575721 3577061 1341 447
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003474 (IPR003474 Gluconate transporter) Apr 2008
Automated Process Approved PF02447 (PF02447 GntP family permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0035429 gluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003474
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gntU Experimental - PubMed ID: 8655507
Reference: Escherichia coli
May 2004
Person Approved synonym gntU_2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Apr 2004
Person Approved synonym gntU_1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Apr 2004
Person Approved synonym ECK3421 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5686 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4476 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product low-affinity gluconate transporter Published Annotation - EcoCyc Accession Number: EG12631
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name gluconate transporter, low affinity GNT 1 system Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name split gene, low-affinity gluconate transport permease protein in GNT I system Experimental - PubMed ID: 8655507
Reference: Escherichia coli
Jan 2006
Protein Family
Automated Process Approved protein family PF02447 GntP family permease Protein Sequence Similarity - PFAM Model Name: PF02447
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR003474 Gluconate transporter Protein Sequence Similarity - InterPro Domain: IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Person Approved MultiFun 4.S.69 (transport; substrate; gluconate) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Person Approved MultiFun 4.2.A.8 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Gluconate:H+ Symporter (GntP) Family) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Person Approved MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12631 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:2847760 Published Annotation - Entrez Gene Database ID: 2847760
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P0AC96 Published Annotation - Swiss-Prot Accession Number: P0AC96 Jan 2006
Automated Process Approved db xref GI:48994939 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC96 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0174105 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 4.S.69 transport; substrate; gluconate Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Apr 2004
Automated Process Approved function 4.2.A.8 transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Gluconate:H+ Symporter (GntP) Family Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 7.3 location of gene products; inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 6.1 cell structure; membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note split gene, low-affinity gluconate transport permease protein in GNT I system; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAT48183.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, merging gntU_1 (b3436) and gntU_2 (b3435) Experimental - GenBank Accession Number: AG613291
Reference: Escherichia coli
May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0035429 gluconate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003474
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0015725 (DEPRECATED) gluconate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0015128 gluconate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003474
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006198 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002351 gntU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002328 gntU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002006 gntU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002231 gntU CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004213 gntU CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004434 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000332 gntU CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000829 gntU CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004219 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306509 gntU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003701 gntU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003360 gntU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001369 gntU CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004888 gntU CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003569 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007658 gntU CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003486 gntU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000757 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005646 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006460 gntU CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007557 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080400 gntU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003925 gntU CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004570 gntU CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007214 gntU CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005312 gntU CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003918 gntU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008347 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004705 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008089 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006603 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006149 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005274 gntU CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009586 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005359 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007401 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005182 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005251 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005091 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004978 gntU CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005580 gntU CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028458 gntU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006494 gntU CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008323 gntU CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004030 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004030 gntU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003936 gntU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004080 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004077 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003868 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003936 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178082 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003775 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003716 gntU CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134357 gntU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002633 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003953 gntU CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003848 gntU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002118 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002864 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0000367 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0002993 gntU CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0001001 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0003811 gntU CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000343 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0008043 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000499 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291474 gntU pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006747 gntU CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137909 gntU CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007908 gntU CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004055 gntU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008158 gntU CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011027 gntU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011932 gntU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005340 gntU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008208 gntU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005558 gntU CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006244 gntU CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007059 gntU CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007301 gntU CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008163 gntU CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006687 gntU CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003425 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003391 gntU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004416 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008329 gntU CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004664 gntU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007799 gntU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004603 gntU CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113987 gntU CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085706 gntU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004270 gntU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100958 gntU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005686 gntU CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005110 gntU CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005124 gntU CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001343 CDS
Person Approved Go view Shigella boydii 227 ADV-0003750 gntU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009309 gntU CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003468 gntU CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004063 gntU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075610 gntU CDS
Person Approved Go view Shigella flexneri 301 ABT-0089692 gntU CDS
Person Approved Go view Shigella sonnei 046 ADD-0004012 gntU CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005276 gntT CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004145 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001264 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3570721 to 3582061
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011206glgXCDScomplement35693463571319Downstream
ABE-0011209glgBCDScomplement35713163573502Downstream
ABE-0285815yhgOCDScomplement35736603573701Downstream
ABE-0285823yhgPCDScomplement35736793573708Downstream
ABE-0011211asdCDScomplement35737753574878Downstream
ABE-0011216yhgNCDSforward35750713575664Downstream
ABE-0174105gntUCDScomplement35757213577061Matches
ABE-0011224gntKCDScomplement35770653577592Upstream
ABE-0011226gntRCDScomplement35777313578726Upstream
ABE-0011228yhhWCDScomplement35789503579645Upstream
ABE-0011232yhhXCDScomplement35797683580805Upstream
ABE-0047271ryhBncRNAcomplement35809233581016Upstream
ABE-0285138ryhBprotein_bindcomplement35810193581037Upstream
ABE-0285136ryhB-10_signalcomplement35810233581028Upstream
ABE-0285137ryhBprotein_bindcomplement35810253581043Upstream
ABE-0285135ryhB-35_signalcomplement35810473581052Upstream
ABE-0011240yhhYCDSforward35811383581626Upstream
ABE-0011244yhhZCDSforward35818633583041Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.