Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174106 (dgoD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174106 showshow history
Names
dgoD yidU JW5629 ECK3684 b4478
Product
galactonate dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3871850 3872998 1149 383
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001354 (IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase) Apr 2008
Automated Process Approved IPR013341 (IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain) Apr 2008
Automated Process Approved IPR013342 (IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal) Apr 2008
Automated Process Approved IPR029065 (IPR029065 Enolase C-terminal domain-like) Jul 2018
Automated Process Approved IPR036849 (IPR036849 Enolase-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF02746 (PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain) Jul 2018
Automated Process Approved PF13378 (PF13378 Enolase C-terminal domain-like) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dgoD Experimental - PubMed ID: 7855594
Reference: Escherichia coli 		Apr 2004
Person Approved synonym ECK3684 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yidU Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5629 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4478 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product galactonate dehydratase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name galactonate dehydratase Experimental - PubMed ID: 7855594
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase Protein Sequence Similarity - InterPro Domain: IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR013341
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13378 Enolase C-terminal domain-like Protein Sequence Similarity - PFAM Model Name: PF13378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029065 Enolase C-terminal domain-like Protein Sequence Similarity - InterPro Domain: IPR029065
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036849 Enolase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036849
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.2.1.6 Published Annotation - Swiss-Prot Accession Number: Q6BF17 Feb 2006
Person Approved MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847765 Published Annotation - Entrez Gene Database ID: 2847765
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:Q6BF17 Published Annotation - Swiss-Prot Accession Number: Q6BF17 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:Q6BF17 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0174106 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994953 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG20050 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Automated Process Approved function 1.1.1 metabolism; carbon utilization; carbon compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48197.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, splitting dgoA (b3692) into dgoA and dgoD Experimental - GenBank Accession Number: AG613303
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003506 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003492 dgoD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003327 dgoD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005388 dgoD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003272 dgoD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001589 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000770 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004338 dgoD CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000010 dgoD_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000289 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004577 CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0003932 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007367 CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003747 dgoD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000481 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005328 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007683 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005908 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080797 dgoD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004532 dgoD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004924 dgoD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007597 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007510 CDS
Person Approved Go view Escherichia coli E24377A (ETEC) ADO-0008632 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005234 dgoD CDS
Person Approved Go view Escherichia coli HS ADR-0008590 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004165 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004031 dgoD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003670 dgoD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004334 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004362 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004166 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178385 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004050 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004054 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004252 dgoD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003642 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000781 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004143 dgoD CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003513 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064754 dgoD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002640 dgoA1 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000798 dgoD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002223 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004379 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008464 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012003 dgoA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011011 dgoA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005031 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008519 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005869 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008467 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006385 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003715 dgoA CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004463 dgoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004784 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008640 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004348 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004626 dgoA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0101826 dgoD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005375 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004797 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006635 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0285656 dgoD pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0286415 dgoD pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0004728 dgoD pseudogene
Person Uncurated Go view Shigella sonnei 046 ADD-0005432 dgoD pseudogene
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004154 dgoD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002078 dgoD CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005192 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001024 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3866850 to 3877998
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012054ibpBCDScomplement38664693866897Downstream
ABE-0012058ibpACDScomplement38670093867422Downstream
ABE-0012063yidQCDSforward38677283868060Downstream
ABE-0012065yidRCDScomplement38680623869276Downstream
ABE-0012068cbrACDSforward38693773870441Downstream
ABE-0012072dgoTCDScomplement38704383871730Downstream
ABE-0174106dgoDCDScomplement38718503872998Matches
ABE-0174107dgoACDScomplement38729953873612Overlaps Upstream
ABE-0012076dgoKCDScomplement38735963874474Upstream
ABE-0174108dgoRCDScomplement38744713875160Upstream
ABE-0012084yidXCDSforward38754383876094Upstream
ABE-0012086yidACDScomplement38761403876952Upstream
ABE-0012089yidBCDScomplement38770673877465Upstream
ABE-0285632repeat_regionforward38775863877683Upstream
ABE-0012093gyrBCDScomplement38777053880119Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.