Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174107 (dgoA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174107 showshow history
Names
dgoA yidU JW5628 ECK3685 b4477
Product
2-keto-3-deoxy-6-phosphogalactonate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3872995 3873612 618 206
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR000887 (IPR000887 KDPG/KHG aldolase) Apr 2008
Automated Process Approved PF01081 (PF01081 KDPG and KHG aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name dgoA Published Annotation - PubMed ID: 7855594
Reference: Escherichia coli K-12 W3110 		Dec 2007
Person Approved synonym ECK3685 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yidU Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW5628 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4477 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product 2-keto-3-deoxy-6-phosphogalactonate aldolase Experimental - PubMed ID: 17981470
Reference: Escherichia coli 		Dec 2020
Person Approved alternate product name 2-oxo-3-deoxygalactonate 6-phosphate aldolase Experimental - PubMed ID: 7855594
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR000887 KDPG/KHG aldolase Protein Sequence Similarity - InterPro Domain: IPR000887
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01081 KDPG and KHG aldolase Protein Sequence Similarity - PFAM Model Name: PF01081
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.2.21 Published Annotation - Swiss-Prot Accession Number: Q6BF16 Feb 2006
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Apr 2004
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994954 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11716 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q6BF16 Published Annotation - Swiss-Prot Accession Number: Q6BF16 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:Q6BF16 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0174107 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847766 Published Annotation - Entrez Gene Database ID: 2847766
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Automated Process Approved function 1.1.1 metabolism; carbon utilization; carbon compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48198.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, splitting dgoA (b3692) into dgoA and dgoD Experimental - GenBank Accession Number: AG613303
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Apr 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003507 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003543 dgoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003226 dgoA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004648 dgoA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003228 dgoA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001590 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000771 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004339 dgoA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000009 dgoA_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0000288 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004576 CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0003933 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007366 CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003748 dgoA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000480 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005327 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007682 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005907 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080798 dgoA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0004533 dgoA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004923 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007598 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007511 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0004255 dgoA CDS
Person Approved Go view Escherichia coli E24377A (ETEC) ADO-0008633 CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005233 dgoA_1 CDS
Person Approved Go view Escherichia coli HS ADR-0008591 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004164 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004032 dgoA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003669 dgoA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004333 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004361 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0004165 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0004254 pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178386 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0004051 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0004055 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0004253 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003643 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000780 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004144 dgoA CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003514 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064755 dgoA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002612 dgoA2 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000799 dgoA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002222 eda-2 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004380 dgoA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008465 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012009 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011009 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005030 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008520 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005870 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008468 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006384 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003716 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004462 dgoA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004785 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008641 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004347 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0285061 dgoA pseudogene
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005374 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004796 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006636 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075262 dgoA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089990 dgoA CDS
Person Uncurated Go view Shigella flexneri 8401 BAG-0004057 dgoA CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0003974 dgoA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004155 dgoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002077 eda_1 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0005197 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001023 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3867995 to 3878612
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0012063yidQCDSforward38677283868060Downstream
ABE-0012065yidRCDScomplement38680623869276Downstream
ABE-0012068cbrACDSforward38693773870441Downstream
ABE-0012072dgoTCDScomplement38704383871730Downstream
ABE-0174106dgoDCDScomplement38718503872998Overlaps Downstream
ABE-0174107dgoACDScomplement38729953873612Matches
ABE-0012076dgoKCDScomplement38735963874474Overlaps Upstream
ABE-0174108dgoRCDScomplement38744713875160Upstream
ABE-0012084yidXCDSforward38754383876094Upstream
ABE-0012086yidACDScomplement38761403876952Upstream
ABE-0012089yidBCDScomplement38770673877465Upstream
ABE-0285632repeat_regionforward38775863877683Upstream
ABE-0012093gyrBCDScomplement38777053880119Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.