Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174113 (ghxQ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174113 showshow history
Names
ghxQ JW5467 ECK2880 ygfR ygfQ b4464
Product
high affinity guanine/hypoxanthine permease
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3027121 3028488 1368 456
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Apr 2008
Automated Process Approved PF00860 (PF00860 Permease family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name ghxQ Published Annotation - PubMed ID: 24214977
Reference: Escherichia coli K-12 		Aug 2018
Person Approved synonym ygfR Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved synonym JW5467 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2880 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygfQ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved locus tag b4464 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product high affinity guanine/hypoxanthine permease Experimental - PubMed ID: 24214977
Reference: Escherichia coli K-12 		Aug 2018
Automated Process Approved alternate product name predicted purine permease Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name predicted transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF00860 Permease family Protein Sequence Similarity - PFAM Model Name: PF00860
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0174113 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13067 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:Q46817 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q46817 Published Annotation - Swiss-Prot Accession Number: Q46817 Jan 2006
Automated Process Approved db xref GI:48994909 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847748 Published Annotation - Entrez Gene Database ID: 2847748
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved protein id AAT48153.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, merging ygfQ (b2884) and ygfR (b2885) Experimental - GenBank Accession Number: AG613248
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264801 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000121 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000058 yjcD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000068 ghxP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000122 yjcD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000048 ghxP CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003766 yjcD_1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002908 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002885 ygfQ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001394 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006305 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079622 ghxQ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003309 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003819 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003340 ygfQ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007646 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009010 CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027895 ygfQ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008392 ghxQ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007723 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004038 ygfQ CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0002956 ygfQ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003391 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003532 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003259 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003211 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003209 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003015 CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0133799 ygfQ CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003278 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3022121 to 3033488
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009459xdhDCDSforward30213163024186Upstream
ABE-0009463xanQCDSforward30243513025751Upstream
ABE-0009465guaDCDSforward30257663027085Upstream
ABE-0174113ghxQCDSforward30271213028488Matches
ABE-0009471ygfSCDScomplement30285243029012Downstream
ABE-0009473ygfTCDScomplement30290123030931Downstream
ABE-0009478uacTCDSforward30313673032815Downstream
ABE-0285227yqfGCDSforward30328173032942Downstream
ABE-0285740yqfHCDScomplement30329393033010Downstream
ABE-0009484idiCDSforward30330653033613Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.