Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0174114 (frlC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0174114 showshow history
Names
frlC JW5699 ECK3360 yhfP yhfO b4474
Product
fructoselysine 3-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3502340 3503170 831 277
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Apr 2008
Automated Process Approved IPR013022 (IPR013022 Xylose isomerase-like, TIM barrel domain) Jul 2018
Automated Process Approved IPR036237 (IPR036237 Xylose isomerase-like superfamily) Jul 2018
Automated Process Approved PF01261 (PF01261 Xylose isomerase-like TIM barrel) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frlC Published Annotation in EcoGene - EG Number: EG12910 May 2004
Person Approved synonym ECK3360 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhfP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved synonym yhfO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Apr 2004
Person Approved synonym JW5699 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b4474 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product fructoselysine 3-epimerase Published Annotation - EcoCyc Accession Number: G7724
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative fructoselysine or fructoselysine 6-P isomerase Experimental - PubMed ID: 12147680
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036237 Xylose isomerase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036237
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013022 Xylose isomerase-like, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR013022
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01261 Xylose isomerase-like TIM barrel Protein Sequence Similarity - PFAM Model Name: PF01261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12910 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P45541 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994933 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:2847758 Published Annotation - Entrez Gene Database ID: 2847758
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P45541 Published Annotation - Swiss-Prot Accession Number: P45541 Jan 2006
Automated Process Approved db xref ASAP:ABE-0174114 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative fructoselysine or fructoselysine 6-P isomerase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48177.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: frameshift error corrected, merging yhfO (b3372) and yhfP (b3373) Experimental - GenBank Accession Number: AG613284
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004493 frlC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004973 frlC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009084 frlC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004030 frlC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008810 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007724 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005718 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006389 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008810 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003853 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004500 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007145 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005381 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008276 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004637 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008024 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006537 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006083 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009917 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009518 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005425 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007333 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005116 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005185 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005026 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005511 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028390 frlC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008256 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004039 frlC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003997 frlC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003705 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134295 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002567 CDS
Person Approved Go view Shigella boydii 227 ADV-0003672 yhfP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009169 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075685 yhfP CDS
Person Approved Go view Shigella flexneri 301 ABT-0089627 yhfP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003590 yhfP CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0003818 yhfP CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3497340 to 3508170
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011008nirCCDSforward34970033497809Upstream
ABE-0011010cysGCDSforward34978283499201Upstream
ABE-0011016yhfLCDSforward34994483499615Upstream
ABE-0011019frlACDSforward34999103501247Upstream
ABE-0011021frlBCDSforward35012683502290Upstream
ABE-0174114frlCCDSforward35023403503170Matches
ABE-0011029frlDCDSforward35031673503952Overlaps Downstream
ABE-0011031frlRCDSforward35040523504783Downstream
ABE-0285599repeat_regionforward35047863504821Downstream
ABE-0011035yhfSCDScomplement35049353506020Downstream
ABE-0011037yhfTCDScomplement35060323507336Downstream
ABE-0011041yhfUCDScomplement35073483507701Downstream
ABE-0011044phpCDScomplement35077123508590Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.