Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0285065 (arnE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0285065 showshow history
Names
arnE pbgE2 pmrL JW2252 ECK2251 yfbW b4544
Product
undecaprenyl phosphate-alpha-L-Ara4N (4-amino-4-deoxy-L-arabinose) flippase component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2372557 2372892 336 112
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Apr 2008
Automated Process Approved IPR000390 (IPR000390 Small multidrug resistance protein family) Jul 2018
Automated Process Approved PF00892 (PF00892 EamA-like transporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000620, IPR000390
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Sequence or Structural Similarity - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name arnE Published Annotation - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Person Approved synonym JW2252 Published Annotation - PubMed ID: 16397293 Feb 2006
Automated Process Approved synonym pbgE2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym pmrL Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym yfbW Published Annotation - PubMed ID: 16397293 Feb 2006
Person Approved synonym ECK2251 Published Annotation - PubMed ID: 16397293 Feb 2006
Person Approved locus tag b4544 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu Feb 2006
Product
Person Uncurated product undecaprenyl phosphate-alpha-L-Ara4N (4-amino-4-deoxy-L-arabinose) flippase component Published Annotation - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Automated Process Approved alternate product name undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00892 EamA-like transporter family Protein Sequence Similarity - PFAM Model Name: PF00892
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000390 Small multidrug resistance protein family Protein Sequence Similarity - InterPro Domain: IPR000390
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14344 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082074 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:1450282 Published Annotation - Entrez Gene Database ID: 1450282
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0285065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:Q47377 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Transport of small molecules: lipids Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function flips undecaprenyl phosphate-alpha-L-Ara4N in the inner membrane, exposing the sugar subunit to the periplasmic space Published Annotation - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Person Uncurated molecular interaction predicted to form heterodimer with arnF Published Annotation - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Person Uncurated mutant phenotype arnE null mutant: gene replacement with kan; an arnE null mutant has reduced levels of L-Ara4N modified lipid A Experimental - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Person Uncurated mutant phenotype arnE null mutant: gene replacement with kan; an arnE null mutant is sensitive to polymyxin Experimental - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Automated Process Approved note GO_component: GO:0016021 - integral to membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id ABD18693.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.46
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Sequence or Structural Similarity - PubMed ID: 17928292
Reference: Escherichia coli K-12 W3110 		Dec 2007
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000620, IPR000390
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002294 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001819 arnE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001819 arnE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000818 arnE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001923 arnE CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002179 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003103 arnE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003822 arnE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0009466 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016241 arnE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004268 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299521 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001221 yfbW CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002459 yfbW CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003277 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005223 CDS
Person Approved Go view Escherichia coli 536 (UPEC) AEF-0002319 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008962 CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0005220 arnE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002065 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006981 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006686 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006678 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078937 arnE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002613 arnE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002987 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006537 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005875 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002549 yfbW CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006988 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000626 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006737 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005262 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006704 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007780 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008239 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005693 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006024 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006957 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007307 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006890 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006185 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007479 CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027232 yfbW CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0005097 arnE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007076 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002832 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0004085 yfbW CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002331 yfbW CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002800 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002711 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002646 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002634 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002558 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002411 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0285153 arnE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000129 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002547 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002078 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003890 yfbJ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0009176 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063430 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004447 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002567 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000406 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007992 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006607 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002696 yfbW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006910 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007366 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007003 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006227 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006904 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006206 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006638 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004285 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006039 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006849 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007414 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000562 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000561 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000685 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007091 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005091 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006608 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006583 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110232 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082273 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002844 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097352 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006979 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004488 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006843 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003632 CDS
Person Approved Go view Shigella boydii 227 ADV-0005157 arnE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008043 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005921 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005641 arnE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073609 CDS
Person Approved Go view Shigella flexneri 301 ABT-0286366 arnE CDS
Person Approved Go view Shigella flexneri 8401 BAG-0002496 CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0005431 arnE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003270 pbgE2 CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000575 CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0006423 CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000877 arnE CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000209 arnE CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001495 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239551 rhaT9 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006722 CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002129 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004907 CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001047 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123315 pmrL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008308 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007774 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008890 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006158 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031619 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008033 CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002254 CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000868 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005696 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002412 pmrL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002860 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002161 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0004310 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001227 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2367557 to 2377892
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007458arnCCDSforward23670712368039Upstream
ABE-0007460arnACDSforward23680392370021Upstream
ABE-0007462arnDCDSforward23700182370908Upstream
ABE-0007464arnTCDSforward23709082372560Overlaps Upstream
ABE-0285065arnECDSforward23725572372892Matches
ABE-0007466arnFCDSforward23728922373278Overlaps Downstream
ABE-0007468pmrDCDScomplement23732722373538Downstream
ABE-0007471menECDScomplement23736482375003Downstream
ABE-0007473menCCDScomplement23750002375962Downstream
ABE-0007476menBCDScomplement23759622376819Downstream
ABE-0007478menHCDScomplement23768342377592Downstream
ABE-0007482menDCDScomplement23775892379259Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.