Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000079 (yaaJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000079 showshow history
Names
yaaJ ECDH10B_0007
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 6529 7959 1431 477
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001463 (IPR001463 Sodium:alanine symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005283 amino acid:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yaaJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000020
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0007 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001463 Sodium:alanine symporter Protein Sequence Similarity - InterPro Domain: IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000020 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000020
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005283 amino acid:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002634 yaaJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002544 yaaJ CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000853 agcS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008608 agcS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000009 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006573 agcS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000007 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009745 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008873 agcS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007693 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076071 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009242 agcS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009549 agcS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000008 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004458 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002940 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009246 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007759 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008263 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009056 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004848 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009188 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008567 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008764 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006119 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008349 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005734 agcS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005395 agcS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023916 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008279 alsT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004689 agcS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000020 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000008 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000008 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000007 agcS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129886 yaaJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001425 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000009 yaaJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004188 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003138 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000007 yaaJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004286 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000022 yaaJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000022 yaaJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006829 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004376 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008093 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004340 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004822 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008432 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004380 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006054 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000007 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000009 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004683 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007371 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004101 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004243 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105291 yaaJ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081717 yaaJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090662 yaaJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004507 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008320 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004299 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005403 agcS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000008 yaaJ CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1529 to 12959
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000074thrACDSforward3372799Downstream
AEC-0000075thrBCDSforward28013733Downstream
AEC-0000076thrCCDSforward37345020Downstream
AEC-0000077yaaXCDSforward52345530Downstream
AEC-0000078yaaACDScomplement56836459Downstream
AEC-0000079yaaJCDScomplement65297959Matches
AEC-0000080talBCDSforward82389191Upstream
AEC-0000081mogCDSforward93069893Upstream
AEC-0000082yaaHCDScomplement992810494Upstream
AEC-0000083yaaWCDScomplement1064311356Upstream
AEC-0000084htgACDSforward1083011315Upstream
AEC-0000085yaaICDScomplement1138211786Upstream
AEC-0000086dnaKCDSforward1216314079Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948