Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000095 (ribF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000095 showshow history
Names
ribF ECDH10B_0026
Product
bifunctional riboflavin kinase and FAD synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 21407 22348 942 314
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Automated Process Approved IPR015865 (IPR015865 Riboflavin kinase domain, bacterial/eukaryotic) Jul 2009
Automated Process Approved IPR002606 (IPR002606 Riboflavin kinase, bacterial) Jul 2009
Automated Process Approved IPR015864 (IPR015864 FAD synthetase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015865
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003919 FMN adenylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002606
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008531 riboflavin kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015865
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ribF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000091
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0026 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional riboflavin kinase and FAD synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015865 Riboflavin kinase domain, bacterial/eukaryotic Protein Sequence Similarity - InterPro Domain: IPR015865
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002606 Riboflavin kinase, bacterial Protein Sequence Similarity - InterPro Domain: IPR002606
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015864 FAD synthetase Protein Sequence Similarity - InterPro Domain: IPR015864
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000091 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000091
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015865
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008531 riboflavin kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015865
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003919 FMN adenylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002606
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000373 ribF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000273 ribF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015129 ribF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000751 ribF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000834 ribF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000024 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006555 ribF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000020 ribF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009723 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010693 ribF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009368 RibF CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076089 ribF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009670 ribF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010172 ribF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000028 ribF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004476 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002960 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009265 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007777 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008282 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004867 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009515 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008587 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008783 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006138 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008367 ribF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005412 ribF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023937 ribF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009393 ribF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004708 ribF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000091 ribF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000027 ribF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000024 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000024 ribF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129907 ribF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001446 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000028 ribF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064194 ribF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002260 ribF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000995 ribF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002251 ribF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004232 ribF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003099 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000045 ribF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004329 ribF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000149 ribF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000145 ribF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006786 ribF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004417 ribF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007271 ribF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004381 ribF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004864 ribF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008474 ribF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004423 ribF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006011 ribF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000048 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000047 ribF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000057 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004726 ribF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006078 ribF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004144 ribF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004287 ribF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105376 ribF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081758 ribF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090770 ribF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004464 ribF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007262 ribF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004342 ribF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000028 ribF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005425 ribF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007374 ribF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000053 ribF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070948 ribF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086386 ribF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000021 ribF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000034 ribF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000086 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001886 b0025 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000247 b0025 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003241 ribF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001806 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243206 ribF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004896 ribF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004848 ribF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005895 ribF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002846 ribF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116946 ribF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005237 ribF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007629 ribF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001666 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007195 ribF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007262 ribF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033483 ribF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004648 ribF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000439 ribF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003778 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007805 ribF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007476 ribF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000658 ribF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000763 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004251 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 16407 to 27348
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000002IS186B.1repeat_regionforward1539016728Upstream
AEC-0000088insL-1CDSforward1544516557Upstream
AEC-0000089mokCCDScomplement1675116960Upstream
AEC-0004011hokCCDScomplement1675116903Upstream
AEC-0004240sokCncRNAforward1695217006Upstream
AEC-0000090nhaACDSforward1748918655Upstream
AEC-0000091nhaRCDSforward1871519620Upstream
AEC-0004548pseudogenecomplement1965819795Upstream
AEC-0000003IS1A.1repeat_regioncomplement1979620563Upstream
AEC-0000092insB-1CDScomplement1981120314Upstream
AEC-0000093insA-1CDScomplement2023320508Upstream
AEC-0004401rpsTCDScomplement2081521078Upstream
AEC-0000094yaaYCDSforward2118121399Upstream
AEC-0000095ribFCDSforward2140722348Matches
AEC-0000096ileSCDSforward2239125207Downstream
AEC-0000097lspACDSforward2520725701Downstream
AEC-0000098fkpBCDSforward2582626275Downstream
AEC-0000099ispHCDSforward2627727227Downstream
AEC-0000100rihCCDSforward2729328207Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948