Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000101 (dapB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000101 showshow history
Names
dapB ECDH10B_0032
Product
dihydrodipicolinate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 28374 29195 822 274
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR000846 (IPR000846 Dihydrodipicolinate reductase, N-terminal) Jul 2009
Automated Process Approved IPR011770 (IPR011770 (DEPRECATED) Dihydrodipicolinate reductase, bacterial/plant) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011770
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dapB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000112
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0032 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dihydrodipicolinate reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000846 Dihydrodipicolinate reductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR000846
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011770 (DEPRECATED) Dihydrodipicolinate reductase, bacterial/plant Protein Sequence Similarity - InterPro Domain: IPR011770
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000112 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000112
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011770
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000846
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000173 dapB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000186 dapB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016734 dapB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000756 dapB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000827 dapB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009044 dapB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000030 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006549 dapB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000027 dapB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009717 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009673 dapB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009374 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076097 dapB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009664 dapB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010178 dapB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000034 dapB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004482 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002967 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009271 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007783 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008288 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009815 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004873 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009521 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008593 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008789 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006144 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008374 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009617 dapB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005418 dapB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023943 dapB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009387 dapB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004714 dapB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000112 dapB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000033 dapB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000030 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000030 dapB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129913 dapB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001453 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000035 dapB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064189 dapB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002270 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000990 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002246 dapB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004253 dapB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003093 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000067 dapB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004349 dapB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000209 dapB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000204 dapB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006767 dapB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004437 dapB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007251 dapB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004401 dapB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004884 dapB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008494 dapB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004443 dapB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005991 dapB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000067 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000066 dapB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000079 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004745 dapB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006057 dapB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004165 dapB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004308 dapB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105415 dapB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081777 dapB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090821 dapB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004444 dapB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007241 dapB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004362 dapB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000034 dapB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005431 dapB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007380 dapB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000059 dapB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070954 dapB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086393 dapB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000027 dapB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000040 dapB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000091 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001901 b0031 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000242 dapB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003534 dapB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001801 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243193 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004890 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004854 dapB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005901 dapB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002839 dapB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116968 dapB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005231 dapB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007636 dapB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001661 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007188 dapB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007255 dapB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033475 dapB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007880 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000446 dapB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003773 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007812 dapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007470 dapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000664 dapB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000769 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004246 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 23374 to 34195
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000096ileSCDSforward2239125207Upstream
AEC-0000097lspACDSforward2520725701Upstream
AEC-0000098fkpBCDSforward2582626275Upstream
AEC-0000099ispHCDSforward2627727227Upstream
AEC-0000100rihCCDSforward2729328207Upstream
AEC-0000101dapBCDSforward2837429195Matches
AEC-0000102carACDSforward2965130799Downstream
AEC-0000103carBCDSforward3081734038Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948