Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000107 (caiC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000107 showshow history
Names
caiC ECDH10B_0038
Product
predicted crotonobetaine CoA ligase:carnitine CoA ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 36271 37824 1554 518

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Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name caiC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000133
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0038 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted crotonobetaine CoA ligase:carnitine CoA ligase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated comment The coordinates of this feature have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the start site predicted in Escherichia coli K-12 MG1655 (ASAP:ABE-0000133), removing 5 codons from the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu Sep 2008
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000133 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000133
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003120 caiC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003337 caiC CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000819 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009037 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000038 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006541 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000034 caiC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009710 caiC pseudogene
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009682 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009382 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076106 caiC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009655 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010187 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000041 caiC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004490 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002975 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009279 caiC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007791 caiC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008296 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009807 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004881 caiC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009529 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008601 caiC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008797 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006152 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008382 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009625 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005426 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023950 caiC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009378 caiC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004722 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000133 caiC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000039 caiC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000039 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000039 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129919 caiC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001461 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000044 caiC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004260 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003079 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000076 caiC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004357 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000240 caiC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006759 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004444 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007243 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004409 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004892 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008502 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004449 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005982 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000074 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000073 caiC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000089 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004752 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006048 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004174 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004317 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105437 caiC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081783 caiC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090848 caiC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004438 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007233 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004369 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000065 caiC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070960 caiC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086399 caiC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000033 caiC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000048 caiC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 31271 to 42824
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000103carBCDSforward3081734038Downstream
AEC-0000104caiFCDSforward3430034695Downstream
AEC-0000105caiECDScomplement3478135371Downstream
AEC-0000106caiDCDScomplement3537736162Downstream
AEC-0000107caiCCDScomplement3627137824Matches
AEC-0000108caiBCDScomplement3789839115Upstream
AEC-0000109caiACDScomplement3924440386Upstream
AEC-0000110caiTCDScomplement4041741931Upstream
AEC-0000111fixACDSforward4240343173Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948