Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000108 (caiB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000108 showshow history
Names
caiB ECDH10B_0039
Product
crotonobetainyl CoA:carnitine CoA transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 37898 39115 1218 406
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003673 (IPR003673 CoA-transferase family III) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name caiB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0039 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product crotonobetainyl CoA:carnitine CoA transferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003673 CoA-transferase family III Protein Sequence Similarity - InterPro Domain: IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000136 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003176 caiB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003360 caiB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000039 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006540 caiB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000035 caiB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009709 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009683 caiB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009383 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076107 caiB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009654 caiB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010188 caiB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000042 caiB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004491 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002976 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009280 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007792 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008297 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009806 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004882 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009530 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008602 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008798 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006153 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008383 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009626 caiB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005427 caiB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023951 caiB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009377 caiB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004723 caiB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000136 caiB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000040 caiB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000040 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000040 caiB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129920 caiB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001462 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000045 caiB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004261 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003078 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000077 caiB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004358 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000243 caiB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000237 caiB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006758 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004445 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007242 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004410 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004893 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008503 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004450 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005981 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000075 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000074 caiB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000090 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004753 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006047 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004175 caiB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004318 caiB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105440 caiB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081784 caiB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090851 caiB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004437 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007232 caiB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004370 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007388 caiB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000066 caiB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070961 caiB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086400 caiB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000034 caiB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 32898 to 44115
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000103carBCDSforward3081734038Downstream
AEC-0000104caiFCDSforward3430034695Downstream
AEC-0000105caiECDScomplement3478135371Downstream
AEC-0000106caiDCDScomplement3537736162Downstream
AEC-0000107caiCCDScomplement3627137824Downstream
AEC-0000108caiBCDScomplement3789839115Matches
AEC-0000109caiACDScomplement3924440386Upstream
AEC-0000110caiTCDScomplement4041741931Upstream
AEC-0000111fixACDSforward4240343173Upstream
AEC-0000112fixBCDSforward4318844129Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948