Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000110 (caiT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000110 showshow history
Names
caiT ECDH10B_0041
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 40417 41931 1515 505
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000060 (IPR000060 BCCT transporter family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name caiT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000141
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0041 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000060 BCCT transporter family Protein Sequence Similarity - InterPro Domain: IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000141 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000141
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003118 caiT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003203 caiT CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000816 caiT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009033 caiT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000041 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006538 caiT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000037 caiT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009707 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009685 caiT CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076109 caiT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009652 caiT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010190 caiT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000044 caiT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004493 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002978 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009282 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007794 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008299 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009804 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004884 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009532 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008604 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008800 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006155 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008385 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009628 caiT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005429 caiT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023953 caiT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009375 caiT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004725 caiT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000141 caiT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000042 caiT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000042 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000042 caiT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129922 caiT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001464 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000047 caiT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004263 caiT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003076 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000080 caiT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004360 caiT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000251 caiT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000245 caiT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006756 caiT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004447 caiT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007240 caiT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004412 caiT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004895 caiT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008505 caiT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004452 caiT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005979 caiT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000077 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000076 caiT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000093 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004755 caiT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006045 caiT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004177 caiT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004320 caiT CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105445 caiT CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081786 caiT CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090857 caiT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004435 caiT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007230 caiT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004372 caiT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007390 caiT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000068 caiT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070964 caiT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086402 caiT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000036 caiT CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000054 caiT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 35417 to 46931
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000106caiDCDScomplement3537736162Downstream
AEC-0000107caiCCDScomplement3627137824Downstream
AEC-0000108caiBCDScomplement3789839115Downstream
AEC-0000109caiACDScomplement3924440386Downstream
AEC-0000110caiTCDScomplement4041741931Matches
AEC-0000111fixACDSforward4240343173Upstream
AEC-0000112fixBCDSforward4318844129Upstream
AEC-0000113fixCCDSforward4418045466Upstream
AEC-0000114fixXCDSforward4546345750Upstream
AEC-0000115yaaUCDSforward4580747138Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948