Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000117 (kefC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000117 showshow history
Names
kefC ECDH10B_0048
Product
potassium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 47769 49631 1863 621
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR006153 (IPR006153 Cation/H+ exchanger) Jul 2009
Automated Process Approved IPR003148 (IPR003148 Regulator of K+ conductance, N-terminal) Jul 2009
Automated Process Approved IPR006036 (IPR006036 Potassium uptake protein TrkA) Jul 2009
Automated Process Approved IPR004771 (IPR004771 K+/H+ exchanger) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015299 solute:proton antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kefC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000161
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0048 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product potassium:proton antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006153 Cation/H+ exchanger Protein Sequence Similarity - InterPro Domain: IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003148 Regulator of K+ conductance, N-terminal Protein Sequence Similarity - InterPro Domain: IPR003148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006036 Potassium uptake protein TrkA Protein Sequence Similarity - InterPro Domain: IPR006036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004771 K+/H+ exchanger Protein Sequence Similarity - InterPro Domain: IPR004771
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000161 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000161
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003148
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015299 solute:proton antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002770 kefC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002860 kefC CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000807 kefC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009026 kefC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000048 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006531 kefC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000043 kefC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009700 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009692 kefC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009672 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076117 kefC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010197 kefC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000051 kefC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004502 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002987 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009289 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007801 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008306 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009797 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004891 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009539 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008611 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008807 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006162 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008392 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009635 kefC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005436 kefC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023960 kefC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009368 kefC_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004734 kefC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000161 kefC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000049 kefC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000049 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000050 kefC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129929 kefC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001473 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000054 kefC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004277 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003068 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000097 kefC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004369 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000285 kefC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000275 kefC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006745 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004460 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007226 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004425 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004907 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008517 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004465 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005965 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000089 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000088 kefC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000112 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004767 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006033 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004191 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004333 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105469 kefC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081800 kefC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090897 kefC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004422 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007218 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004386 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000041 kefC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005437 kefC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007397 kefC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000076 kefC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070971 kefC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086409 kefC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000043 kefC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000061 kefC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 42769 to 54631
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000111fixACDSforward4240343173Upstream
AEC-0000112fixBCDSforward4318844129Upstream
AEC-0000113fixCCDSforward4418045466Upstream
AEC-0000114fixXCDSforward4546345750Upstream
AEC-0000115yaaUCDSforward4580747138Upstream
AEC-0000116kefFCDSforward4724647776Overlaps Upstream
AEC-0000117kefCCDSforward4776949631Matches
AEC-0000118folACDSforward4982350302Downstream
AEC-0000119apaHCDScomplement5038051222Downstream
AEC-0000120apaGCDScomplement5122951606Downstream
AEC-0000121ksgACDScomplement5160952430Downstream
AEC-0000122pdxACDScomplement5242753416Downstream
AEC-0000123surACDScomplement5341654702Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948