Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000124 (imp) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000124 showshow history
Names
imp ECDH10B_0055
Product
exported protein required for envelope biosynthesis and integrity
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 54755 57109 2355 785
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005653 (IPR005653 Organic solvent tolerance-like, N-terminal) Jul 2009
Automated Process Approved IPR007543 (IPR007543 LptD, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0010033 response to organic substance GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016044 (DEPRECATED) cellular membrane organization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name imp Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000183
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0055 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product exported protein required for envelope biosynthesis and integrity Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005653 Organic solvent tolerance-like, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005653
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007543 LptD, C-terminal Protein Sequence Similarity - InterPro Domain: IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000183 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000183
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0016044 (DEPRECATED) cellular membrane organization GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0010033 response to organic substance GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001563 lptD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001035 lptD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016712 lptD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000767 imp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000798 imp CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000058 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006524 imp CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000050 imp CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009691 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076127 imp CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000060 imp CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004509 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002996 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009298 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007810 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004900 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009548 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008620 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008816 imp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006171 imp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005445 imp CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0023970 imp CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004741 imp CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000183 lptD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000056 imp CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000056 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000059 imp CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129938 imp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001482 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000062 imp CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064173 imp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002227 imp CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002174 imp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002233 imp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004284 imp CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003061 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000106 imp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004377 imp CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000311 imp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000301 imp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006736 imp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004468 imp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007219 imp CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004433 imp CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004914 imp CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008524 imp CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004472 imp CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005957 imp CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000096 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000095 imp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000120 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004774 imp CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006026 imp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004199 imp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004341 imp CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105486 imp CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081807 imp CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0090910 imp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004415 imp CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007211 imp CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004394 imp CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000048 imp CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005444 imp CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000085 imp CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0070979 imp CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086416 imp CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000050 imp CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000068 imp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000103 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001944 b0054 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000229 lptD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003522 imp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001789 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243161 imp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004874 imp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004873 imp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005919 imp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002824 imp CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117020 imp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005213 imp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008455 imp CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003492 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007170 imp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007237 imp CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033460 imp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007898 imp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000465 imp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003755 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007829 imp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007456 imp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000678 imp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000785 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004229 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 49755 to 62109
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000118folACDSforward4982350302Downstream
AEC-0000119apaHCDScomplement5038051222Downstream
AEC-0000120apaGCDScomplement5122951606Downstream
AEC-0000121ksgACDScomplement5160952430Downstream
AEC-0000122pdxACDScomplement5242753416Downstream
AEC-0000123surACDScomplement5341654702Downstream
AEC-0000124impCDScomplement5475557109Matches
AEC-0000125djlACDSforward5736458179Upstream
AEC-0000126yabP_1CDSpforward5847459124Upstream
AEC-0004402yabPpseudogeneforward5847459269Upstream
AEC-0000127yabP_2CDSpforward5912159279Upstream
AEC-0000128rluACDScomplement5968760346Upstream
AEC-0004217hepApseudogenecomplement6035862378Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948