Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000132 (murD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000132 showshow history
Names
murD ECDH10B_0070
Product
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 71191 72507 1317 439
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Jul 2009
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Jul 2009
Automated Process Approved IPR005762 (IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD) Jul 2009
Automated Process Approved IPR006162 (IPR006162 Phosphopantetheine attachment site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031177 phosphopantetheine binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000318
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0070 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase Experimental - PubMed ID: 2681153
Reference: Escherichia coli 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD Protein Sequence Similarity - InterPro Domain: IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006162 Phosphopantetheine attachment site Protein Sequence Similarity - InterPro Domain: IPR006162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000318 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000318
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005762
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031177 phosphopantetheine binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006162
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000239 murD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000178 murD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018263 murD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000793 murD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000764 murD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008700 murD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000091 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006487 oppB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000083 murD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009653 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009069 murD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008057 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076170 murD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009503 murD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009789 murD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000098 murD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004541 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002563 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009336 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007846 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008528 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009509 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004936 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009505 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008658 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007658 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010721 murD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009580 murD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009204 murD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009881 murD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024004 murD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009938 murD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004776 murD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000318 murD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000090 murD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000091 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000094 murD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129971 murD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001518 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000098 murD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064134 murD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002172 murD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004206 murD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003946 murD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004324 murD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003022 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000146 murD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004414 murD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000424 murD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000410 murD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006699 murD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004506 murD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007181 murD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004473 murD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004951 murD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008562 murD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004511 murD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005919 murD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000130 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000129 murD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000164 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004811 murD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005988 murD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004236 murD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004380 murD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105563 murD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081841 murD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091028 murD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004376 murD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007171 murD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004432 murD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000082 murD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005479 murD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007229 murD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000129 murD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071018 murD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086449 murD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000084 murD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000104 murD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001549 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002061 murD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000197 murD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002608 murD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001619 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243044 murD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007035 murD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004234 murD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005973 murD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002768 murD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117202 murD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005151 murD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008575 murD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003443 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007111 murD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007720 murD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033406 murD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007960 murD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000523 murD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003698 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007540 murD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007404 murD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000728 murD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000846 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004172 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 66191 to 77507
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004406ftsICDSforward6551767283Upstream
AEC-0004407murECDSforward6727068757Upstream
AEC-0000130murFCDSforward6875470112Upstream
AEC-0000131mraYCDSforward7010671188Upstream
AEC-0000132murDCDSforward7119172507Matches
AEC-0000133ftsWCDSforward7250773751Overlaps Downstream
AEC-0000134murGCDSforward7374874815Downstream
AEC-0000135murCCDSforward7486976344Downstream
AEC-0000136ddlBCDSforward7633777257Downstream
AEC-0000137ftsQCDSforward7725978089Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948