Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000140 (lpxC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000140 showshow history
Names
lpxC ECDH10B_0078
Product
UDP-3-O-acyl N-acetylglucosamine deacetylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 80661 81578 918 306
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015870 (IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal) Jul 2009
Automated Process Approved IPR011334 (IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal) Jul 2009
Automated Process Approved IPR004463 (IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015870
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015870
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000336
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0078 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-3-O-acyl N-acetylglucosamine deacetylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011334
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase Protein Sequence Similarity - InterPro Domain: IPR004463
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR015870
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000336 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000336
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015870
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015870
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001511 lpxC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000962 lpxC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017965 lpxC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000801 lpxC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000756 lpxC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000099 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006479 lpxC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000091 lpxC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009645 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076178 lpxC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000106 lpxC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004549 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001395 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009344 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007854 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008536 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004944 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008667 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007666 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010729 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009889 lpxC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024012 lpxC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004784 lpxC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000336 lpxC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000098 lpxC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000099 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000102 lpxC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129979 lpxC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001526 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000106 lpxC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064126 lpxC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002188 lpxC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002151 lpxC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003938 lpxC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004332 lpxC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003012 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000154 lpxC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004422 lpxC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000460 lpxC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000447 lpxC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008389 lpxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004514 lpxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007173 lpxC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004481 lpxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004959 lpxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008570 lpxC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004519 lpxC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005911 lpxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000138 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000137 lpxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000172 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004819 lpxC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005980 lpxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004244 lpxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004388 lpxC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105582 lpxC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081849 lpxC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091054 lpxC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004368 lpxC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007163 lpxC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004440 lpxC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000090 lpxC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005487 lpxC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000137 lpxC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071026 lpxC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086457 lpxC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000092 lpxC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000112 lpxC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001541 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002096 asmB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000189 lpxC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002600 lpxC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001627 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243025 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007027 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004225 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005981 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002760 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117234 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005143 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008567 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003053 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007103 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007712 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033398 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007968 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000532 lpxC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003689 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007532 lpxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007396 lpxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000736 lpxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000855 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004163 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 75661 to 86578
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000135murCCDSforward7486976344Upstream
AEC-0000136ddlBCDSforward7633777257Upstream
AEC-0000137ftsQCDSforward7725978089Upstream
AEC-0000138ftsACDSforward7808679348Upstream
AEC-0000139ftsZCDSforward7940980560Upstream
AEC-0000140lpxCCDSforward8066181578Matches
AEC-0000141secMCDSforward8180982321Downstream
AEC-0000142secACDSforward8238385088Downstream
AEC-0000143mutTCDSforward8514885537Downstream
AEC-0000144yacGCDScomplement8575385950Downstream
AEC-0000145yacFCDScomplement8596086703Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948