Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000154 (aroP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000154 showshow history
Names
aroP ECDH10B_0092
Product
aromatic amino acid transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 94282 95655 1374 458
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Automated Process Approved IPR004840 (IPR004840 Amino acid permease, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000384
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0092 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aromatic amino acid transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004840 Amino acid permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000384 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000384
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000071 aroP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000025 aroP CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000852 aroP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000742 aroP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000113 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006465 aroP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000104 aroP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009630 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010191 aroP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006540 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076196 aroP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009944 aroP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006923 aroP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000120 aroP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004564 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001381 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009359 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007868 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008550 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010622 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004958 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009386 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008682 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007681 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009853 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010423 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009134 aroP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009904 aroP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024028 aroP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009527 aroP CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004798 aroP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000384 aroP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000112 aroP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000113 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000116 aroP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129995 aroP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001541 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000121 aroP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004351 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002989 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000172 aroP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004441 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000518 aroP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000504 aroP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008369 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004531 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007155 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004499 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004978 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008589 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004536 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005894 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000156 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000155 aroP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000190 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004837 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005961 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004262 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004406 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105623 aroP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081867 aroP CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091097 aroP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004349 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007143 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004457 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000108 aroP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005503 aroP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005985 aroP CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000153 aroP CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071043 aroP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086472 aroP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000106 aroP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000128 aroP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002905 aroP1 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 89282 to 100655
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000148hofCCDScomplement8862689828Downstream
AEC-0000149hofBCDScomplement8981891203Downstream
AEC-0000150ppdDCDScomplement9121391653Downstream
AEC-0000151nadCCDScomplement9185692749Downstream
AEC-0000152ampDCDSforward9283793388Downstream
AEC-0000153ampECDSforward9338594239Downstream
AEC-0000154aroPCDScomplement9428295655Matches
AEC-0000155pdhRCDSforward9619696960Upstream
AEC-0000156aceECDSforward9712199784Upstream
AEC-0000157aceFCDSforward99799101691Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948