Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000160 (acnB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000160 showshow history
Names
acnB ECDH10B_0098
Product
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 105719 108316 2598 866
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015933 (IPR015933 Aconitase B, HEAT-like domain) Jul 2009
Automated Process Approved IPR015928 (IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel) Jul 2009
Automated Process Approved IPR015931 (IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3) Jul 2009
Automated Process Approved IPR015932 (IPR015932 Aconitase, domain 2) Jul 2009
Automated Process Approved IPR004406 (IPR004406 Aconitase B) Jul 2009
Automated Process Approved IPR015929 (IPR015929 Aconitase B, swivel) Jul 2009
Automated Process Approved IPR001030 (IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain) Jul 2009
Automated Process Approved IPR015930 (IPR015930 (DEPRECATED) Aconitase B, iron-sulphur-binding, bacterial) Jul 2009
Automated Process Approved IPR015937 (IPR015937 (DEPRECATED) Aconitase/isopropylmalate dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015928
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003994 aconitate hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acnB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000411
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0098 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004406 Aconitase B Protein Sequence Similarity - InterPro Domain: IPR004406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015932 Aconitase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR015932
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015929 Aconitase B, swivel Protein Sequence Similarity - InterPro Domain: IPR015929
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Protein Sequence Similarity - InterPro Domain: IPR001030
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015937 (DEPRECATED) Aconitase/isopropylmalate dehydratase Protein Sequence Similarity - InterPro Domain: IPR015937
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015930 (DEPRECATED) Aconitase B, iron-sulphur-binding, bacterial Protein Sequence Similarity - InterPro Domain: IPR015930
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Protein Sequence Similarity - InterPro Domain: IPR015931
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Protein Sequence Similarity - InterPro Domain: IPR015928
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015933 Aconitase B, HEAT-like domain Protein Sequence Similarity - InterPro Domain: IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000411 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000411
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015928
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004406
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003994 aconitate hydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015933
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000835 acnB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000497 acnB CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000868 acnB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000735 acnB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009547 acnB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000126 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006459 acnB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000114 acnB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009623 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007834 acnB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006533 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076211 acnB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009951 acnB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006917 acnB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000126 acnB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004570 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001375 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009367 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007874 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008557 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010697 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004965 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009393 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007690 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009846 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009141 acnB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009910 acnB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024034 acnB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009538 acnB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004804 acnB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000411 acnB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000118 acnB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000119 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000129 acnB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130001 acnB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001547 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000132 acnB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064095 acnB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002160 acnB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002143 acnB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003186 acnB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004361 acnB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002980 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000180 acnB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004450 acnB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000549 acnB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000535 acnB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008360 acnB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004540 acnB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007146 acnB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004508 acnB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004986 acnB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008598 acnB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004545 acnB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005885 acnB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000164 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000163 acnB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000201 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004846 acnB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005951 acnB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004272 acnB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004416 acnB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105645 acnB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081875 acnB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091132 acnB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004340 acnB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007135 acnB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004467 acnB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000114 acnB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005509 acnB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005995 acnB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000029 acnB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071050 acnB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255903 acnB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000112 acnB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000134 acnB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002251 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002187 acnB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000164 acnB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002898 acnB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001650 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234807 acnB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005134 acnB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003497 acnB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008210 acnB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003942 acnB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126832 acnB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006381 acnB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005870 acnB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003417 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005857 acnB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004209 acnB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030408 acnB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006612 acnB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000825 acnB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003522 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004909 acnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007374 acnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000758 acnB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000880 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004138 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 100719 to 113316
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000157aceFCDSforward99799101691Upstream
AEC-0000158lpdCDSforward102016103440Upstream
AEC-0000159yacHCDScomplement103511105364Upstream
AEC-0000160acnBCDSforward105719108316Matches
AEC-0000161yacLCDSforward108492108854Downstream
AEC-0000162speDCDScomplement108892109686Downstream
AEC-0000163speECDScomplement109702110568Downstream
AEC-0000164yacCCDScomplement110674111021Downstream
AEC-0000165cueOCDSforward111187112737Downstream
AEC-0000166gcdCDScomplement112939115329Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948