Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000173 (panD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000173 showshow history
Names
panD ECDH10B_0111
Product
aspartate 1-decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 120418 120798 381 127
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Jul 2009
Automated Process Approved IPR003190 (IPR003190 Aspartate decarboxylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006523 alanine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004068 aspartate 1-decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name panD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000459
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0111 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aspartate 1-decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003190 Aspartate decarboxylase Protein Sequence Similarity - InterPro Domain: IPR003190
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000459 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000459
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006523 alanine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004068 aspartate 1-decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003190
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001275 panD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001545 panD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015446 panD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000895 panD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000722 panD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008395 panD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000140 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006446 panD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000127 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009606 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007847 panD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006517 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076224 panD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005778 panD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006904 panD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000139 panD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004583 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001361 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009381 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007888 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008571 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010576 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004979 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009407 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008707 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007704 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009832 panD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010285 panD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009155 panD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009505 panD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024047 panD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007925 panD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004817 panD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000459 panD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000131 panD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000132 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000142 panD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130014 panD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001561 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000145 panD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063618 panD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001937 panD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000856 panD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004087 panD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004394 panD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002962 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000203 panD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004474 panD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000631 panD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000612 panD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008327 panD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004578 panD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007108 panD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004531 panD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005024 panD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008636 panD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004570 panD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005861 panD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000188 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000187 panD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000226 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004869 panD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005927 panD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004294 panD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004438 panD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105689 panD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081892 panD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091195 panD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004307 panD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007110 panD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004490 panD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000127 panD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005522 panD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006008 panD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000046 panD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071063 panD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086490 panD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000124 panD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000147 panD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002237 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002226 panD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000151 panD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000447 panD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000867 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234838 panD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005119 panD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003480 panD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008196 panD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003954 panD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126790 panD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006395 panD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005884 panD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002834 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005871 panD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004223 panD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030421 panD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006626 panD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000842 panD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003539 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004894 panD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007360 panD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000770 panD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000897 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004121 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 115418 to 125798
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000167hptCDSforward115535116071Downstream
AEC-0000168canCDScomplement116112116774Downstream
AEC-0000169yadGCDSforward116883117809Downstream
AEC-0000170yadHCDSforward117806118576Downstream
AEC-0000171yadICDSforward118681119121Downstream
AEC-0000172yadECDSforward119185120414Downstream
AEC-0000173panDCDScomplement120418120798Matches
AEC-0000174yadDCDSforward121072121974Upstream
AEC-0000175panCCDScomplement122048122899Upstream
AEC-0000176panBCDScomplement122911123705Upstream
AEC-0000177yadCCDScomplement123819125057Upstream
AEC-0000178yadKCDScomplement125107125703Upstream
AEC-0000179yadLCDScomplement125730126335Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948