Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000190 (mrcB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000190 showshow history
Names
mrcB ECDH10B_0129
Product
bifunctional glycosyl transferase and transpeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 138834 141368 2535 845
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011813 (IPR011813 Penicillin-binding protein 1B) Jul 2009
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Jul 2009
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Jul 2009
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008955 peptidoglycan glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mrcB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000516
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0129 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Uncurated product bifunctional glycosyl transferase and transpeptidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011813 Penicillin-binding protein 1B Protein Sequence Similarity - InterPro Domain: IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000516 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000516
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008955 peptidoglycan glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011813
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000181 mrcB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000187 mrcB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046521 mrcB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000904 mrcB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000702 mrcB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008416 mrcB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000160 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006424 mrcB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000146 mrcB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009581 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007869 mrcB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006496 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076247 mrcB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005800 mrcB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006883 mrcB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000157 mrcB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004603 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001342 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009400 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007907 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008590 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009472 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004998 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009558 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008726 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007723 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009813 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009886 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010009 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009524 mrcB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024066 mrcB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007906 mrcB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004834 mrcB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000516 mrcB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000149 mrcB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000150 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000161 mrcB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130032 mrcB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001580 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000165 mrcB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063608 mrcB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001902 mrcB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004134 mrcB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004075 mrcB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004405 mrcB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002951 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000213 mrcB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004484 mrcB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000661 mrcB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000642 mrcB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008317 mrcB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004588 mrcB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007098 mrcB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004548 mrcB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005034 mrcB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008646 mrcB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004580 mrcB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005851 mrcB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000198 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000197 mrcB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000246 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004879 mrcB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005917 mrcB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004312 mrcB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004456 mrcB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105724 mrcB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081909 mrcB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091220 mrcB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004297 mrcB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007099 mrcB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004500 mrcB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000148 mrcB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005538 mrcB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006029 mrcB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000180 mrcB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071080 mrcB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086503 mrcB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000138 mrcB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000174 mrcB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002227 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002253 b0149 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000141 mrcB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000457 mrcB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000879 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234852 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005106 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003469 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008183 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004278 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126767 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006408 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005896 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003985 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005882 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004235 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030432 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006638 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000853 mrcB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003549 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004883 mrcB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007349 mrcB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000780 mrcB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000908 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004110 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 133834 to 146368
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000185yadBCDScomplement133290134216Upstream
AEC-0000186dksACDScomplement134253134708Upstream
AEC-0000187sfsACDScomplement134886135590Upstream
AEC-0000188ligTCDScomplement135605136135Upstream
AEC-0000189hrpBCDSforward136209138638Upstream
AEC-0000190mrcBCDSforward138834141368Matches
AEC-0004409fhuACDSforward141588143831Downstream
AEC-0000191fhuCCDSforward143882144679Downstream
AEC-0000192fhuDCDSforward144679145569Downstream
AEC-0000193fhuBCDSforward145566147548Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948