Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000192 (fhuD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000192 showshow history
Names
fhuD ECDH10B_0132
Product
iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 144679 145569 891 297
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002491 (IPR002491 ABC transporter periplasmic binding domain) Jul 2009
Automated Process Approved IPR008091 (IPR008091 (DEPRECATED) Ferrichrome-binding periplasmic protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006827 (DEPRECATED) high-affinity iron ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fhuD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000524
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_0132 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR002491 ABC transporter periplasmic binding domain Protein Sequence Similarity - InterPro Domain: IPR002491
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR008091 (DEPRECATED) Ferrichrome-binding periplasmic protein Protein Sequence Similarity - InterPro Domain: IPR008091
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000524 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000524
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006827 (DEPRECATED) high-affinity iron ion transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002491
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001689 fhuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001987 fhuD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015426 fhuD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000917 fhuD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000699 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008420 fhuD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000163 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006420 fhuD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000149 fhuD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009576 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007873 fhuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006492 FhuD CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076251 fhuD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005804 fhuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006879 fhuD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000164 fhuD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004607 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001338 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009404 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007911 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008594 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009476 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005002 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009562 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008730 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007727 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009809 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009882 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010013 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009528 fhuD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024069 fhuD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007902 fhuD_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004838 fhuD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000524 fhuD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000152 fhuD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000154 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000165 fhuD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130035 fhuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001584 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000169 fhuD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063606 fhuD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001900 fhuD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002040 fhuD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004073 fhuD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004409 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002948 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000216 fhuD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004488 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000676 fhuD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000657 fhuD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008313 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004592 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004552 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005038 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008650 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004584 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005847 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000201 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000200 fhuD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000251 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004883 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005913 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004316 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004460 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105735 fhuD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081912 fhuD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091225 fhuD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007095 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004504 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000151 fhuD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005542 fhuD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006032 fhuD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000183 fhuD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071083 fhuD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086506 fhuD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000141 fhuD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000177 fhuD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002225 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002261 fhuD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000139 fhuD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000459 fhuD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000881 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234855 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005103 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003467 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008180 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003965 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126760 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006411 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005899 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003983 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005885 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004238 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030434 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006640 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000855 fhuD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003552 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004881 fhuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007347 fhuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000782 fhuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000910 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004108 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 139679 to 150569
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000190mrcBCDSforward138834141368Upstream
AEC-0004409fhuACDSforward141588143831Upstream
AEC-0000191fhuCCDSforward143882144679Overlaps Upstream
AEC-0000192fhuDCDSforward144679145569Matches
AEC-0000193fhuBCDSforward145566147548Overlaps Downstream
AEC-0000194hemLCDScomplement147706148986Downstream
AEC-0000195clcACDSforward149211150632Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948