Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000195 (clcA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000195 showshow history
Names
clcA ECDH10B_0135
Product
chloride channel, voltage-gated
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 149211 150632 1422 474
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014743 (IPR014743 Chloride channel, core) Jul 2009
Automated Process Approved IPR001807 (IPR001807 Chloride channel, voltage gated) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006821 chloride transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005247 voltage-gated chloride channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005216 ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014743
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name clcA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000533
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_0135 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product chloride channel, voltage-gated Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR014743 Chloride channel, core Protein Sequence Similarity - InterPro Domain: IPR014743
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001807 Chloride channel, voltage gated Protein Sequence Similarity - InterPro Domain: IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000533 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000533
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006821 chloride transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005247 voltage-gated chloride channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001807
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005216 ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014743
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001969 clcA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001920 clcA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015422 clcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000696 clcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008423 clcA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000166 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006363 clcA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000152 yadQ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009571 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007876 clcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006489 ClcA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076254 clcA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005807 clcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006876 clcA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000167 clcA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004610 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001335 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009407 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007914 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008597 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009479 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005005 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009565 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008733 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007730 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009806 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009879 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010016 clcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009531 clcA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024072 clcA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007899 clcA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004841 clcA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000533 clcA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000155 clcA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000157 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000168 clcA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130038 clcA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001587 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000172 yadQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004421 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002945 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000228 yadQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004501 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000717 yadQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000693 yadQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008299 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004606 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008637 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004555 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005052 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008664 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004597 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005833 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000212 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000210 yadQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000265 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004896 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005899 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004320 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004464 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105744 yadQ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081915 yadQ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091251 yadQ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004280 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007083 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004516 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000154 yadQ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005545 clcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006035 clcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000186 yadQ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071086 yadQ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086509 yadQ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000144 yadQ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000180 clcA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002222 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002275 yadQ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000136 yadQ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000462 yadQ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000884 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234880 eriC1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005099 clcA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003464 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008176 clcA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003968 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126720 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006415 clcA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005903 clcA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003980 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005889 clcA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004242 clcA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030437 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006644 clcA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000858 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003555 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004877 clcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007344 clcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000785 yadQ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000914 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004105 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 144211 to 155632
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000191fhuCCDSforward143882144679Upstream
AEC-0000192fhuDCDSforward144679145569Upstream
AEC-0000193fhuBCDSforward145566147548Upstream
AEC-0000194hemLCDScomplement147706148986Upstream
AEC-0000195clcACDSforward149211150632Matches
AEC-0000196yadRCDSforward150714151058Downstream
AEC-0000197yadSCDScomplement151105151728Downstream
AEC-0000198btuFCDScomplement151766152566Downstream
AEC-0000199pfsCDScomplement152559153257Downstream
AEC-0000200dgtCDSforward153341154858Downstream
AEC-0000201degPCDSforward154988156412Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948