Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000199 (pfs) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000199 showshow history
Names
pfs ECDH10B_0139
Product
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 152559 153257 699 233
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Jul 2009
Automated Process Approved IPR010049 (IPR010049 MTA/SAH nucleosidase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019509 L-methionine salvage from methylthioadenosine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009164 nucleoside catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008930 methylthioadenosine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008782 adenosylhomocysteine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pfs Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0139 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Experimental - PubMed ID: 9524204 Mar 2007
Protein Family
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010049 MTA/SAH nucleosidase Protein Sequence Similarity - InterPro Domain: IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000545 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000545
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009164 nucleoside catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019509 L-methionine salvage from methylthioadenosine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008930 methylthioadenosine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008782 adenosylhomocysteine nucleosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010049
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000437 mtn CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000555 mtn CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015417 mtnN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000922 mtnN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000692 mtnN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008427 mtnN CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000170 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006359 mtnN CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000156 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009566 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007880 mtnN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006485 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076259 pfs CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005811 mtnN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006872 mtnN CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000171 pfs CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004614 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001331 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009411 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007918 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008601 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009483 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005009 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009569 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008737 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007734 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009802 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009875 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010020 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009535 mtnN CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024076 pfs CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007895 mtnN CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004845 mtnN CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000545 mtn CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000159 pfs CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000161 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000172 mtnN CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130042 pfs CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001591 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000176 mtn CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063598 pfs CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001914 mtnN CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000848 mtn CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004064 pfs CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004426 mtnN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002941 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000233 pfs CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004505 mtnN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000733 pfs CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000707 pfs CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008295 mtnN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004610 mtnN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008633 mtnN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004559 mtnN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005056 mtnN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008668 mtnN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004601 mtnN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005829 mtnN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000216 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000214 pfs CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000269 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004900 mtnN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005895 mtnN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004324 mtnN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004468 mtnN CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105752 pfs CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081919 pfs CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091258 pfs CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004276 mtnN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007079 mtnN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004520 mtnN CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000158 pfs CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005549 mtnN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006039 mtnN CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000190 pfs CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071090 pfs CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086513 pfs CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000148 pfs CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000184 pfs CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002979 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002289 mtnN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000132 mtnN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000466 pfs CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000889 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234904 pfs CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005095 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003458 pfs CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008172 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003972 pfs CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126705 pfs CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006419 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005907 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005893 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004246 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030442 pfs CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006648 mtnN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000864 pfs CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003561 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004873 mtnN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007340 mtnN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000789 pfs CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000919 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004100 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 147559 to 158257
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000194hemLCDScomplement147706148986Downstream
AEC-0000195clcACDSforward149211150632Downstream
AEC-0000196yadRCDSforward150714151058Downstream
AEC-0000197yadSCDScomplement151105151728Downstream
AEC-0000198btuFCDScomplement151766152566Overlaps Downstream
AEC-0000199pfsCDScomplement152559153257Matches
AEC-0000200dgtCDSforward153341154858Upstream
AEC-0000201degPCDSforward154988156412Upstream
AEC-0000202cdaRCDSforward156567157724Upstream
AEC-0000203yaeHCDScomplement157813158199Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948