Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000214 (cdsA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000214 showshow history
Names
cdsA ECDH10B_0155
Product
CDP-diglyceride synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 169781 170638 858 286
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000374 (IPR000374 Phosphatidate cytidylyltransferase) Jul 2009
Automated Process Approved IPR005798 (IPR005798 Cytochrome b/b6, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cdsA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000600
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0155 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product CDP-diglyceride synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000374 Phosphatidate cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR000374
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005798 Cytochrome b/b6, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000600 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000600
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000374
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000699 cdsA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000527 cdsA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046546 cdsA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000936 cdsA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000675 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008444 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000184 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006342 cdsA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000170 cdsA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009548 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007896 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076277 cdsA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005827 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006854 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000186 cdsA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004628 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001315 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009427 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007934 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008617 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009499 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005025 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009585 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008754 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007750 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009787 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010852 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009551 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024091 cdsA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007880 cdsA_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004860 cdsA1 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000600 cdsA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000175 cdsA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000175 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000187 cdsA1 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130056 cdsA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001606 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000191 cdsA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061280 cdsA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000556 cdsA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001481 cdsA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001674 cdsA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004442 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002924 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000250 cdsA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004522 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000788 cdsA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000758 cdsA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008279 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004626 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008563 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004576 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005072 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008684 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004617 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005813 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000232 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000230 cdsA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000289 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004916 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008426 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004341 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004486 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105794 cdsA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081934 cdsA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091300 cdsA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004260 cdsA1 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009373 cdsA1 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004536 cdsA1 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000173 cdsA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005566 cdsA1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008561 cdsA1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000207 cdsA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071106 cdsA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086526 cdsA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000162 cdsA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000201 cdsA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002073 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009493 cds CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003458 cdsA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002438 cdsA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000512 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241071 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007550 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000643 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005101 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002310 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118700 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008405 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007341 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003386 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009259 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006405 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032888 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005600 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003551 cdsA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001991 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006057 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004972 cdsA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003099 cdsA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003726 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001252 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 164781 to 175638
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000209tsfCDSforward164961165812Upstream
AEC-0000210pyrHCDSforward165959166684Upstream
AEC-0000211frrCDSforward166976167533Upstream
AEC-0000212dxrCDSforward167625168821Upstream
AEC-0000213ispUCDSforward169007169768Upstream
AEC-0000214cdsACDSforward169781170638Matches
AEC-0000215rsePCDSforward170650172002Downstream
AEC-0000216bamACDSforward172032174464Downstream
AEC-0000217skpCDSforward174586175071Downstream
AEC-0000218lpxDCDSforward175075176100Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948