Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000220 (lpxA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000220 showshow history
Names
lpxA ECDH10B_0161
Product
UDP-N-acetylglucosamine acetyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 176664 177452 789 263
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011004 (IPR011004 Trimeric LpxA-like superfamily) Jul 2009
Automated Process Approved IPR001451 (IPR001451 Hexapeptide repeat) Jul 2009
Automated Process Approved IPR010137 (IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011004
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000618
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0161 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-N-acetylglucosamine acetyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011004 Trimeric LpxA-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011004
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Protein Sequence Similarity - InterPro Domain: IPR010137
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001451 Hexapeptide repeat Protein Sequence Similarity - InterPro Domain: IPR001451
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000618 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000618
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011004
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010137
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000508 lpxA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000511 lpxA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017469 lpxA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000942 lpxA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000669 lpxA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009286 lpxA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000190 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006336 lpxA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000176 lpxA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009540 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007902 lpxA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007283 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076283 lpxA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005833 lpxA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006848 lpxA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000192 lpxA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004634 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002479 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009434 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007940 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008623 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010280 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005031 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010285 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008760 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009364 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010529 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010193 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009557 lpxA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024097 lpxA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007874 lpxA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004866 lpxA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000618 lpxA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000181 lpxA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000181 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000193 lpxA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130062 lpxA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001612 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000197 lpxA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061286 lpxA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000565 lpxA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003588 lpxA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001680 lpxA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004448 lpxA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002917 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000256 lpxA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004528 lpxA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000824 lpxA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000794 lpxA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008941 lpxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004632 lpxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008569 lpxA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004582 lpxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005078 lpxA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008690 lpxA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004623 lpxA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005807 lpxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000238 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000236 lpxA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000296 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004922 lpxA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008420 lpxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004347 lpxA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004492 lpxA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105817 lpxA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081940 lpxA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091316 lpxA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004254 lpxA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009229 lpxA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004542 lpxA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000179 lpxA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005572 lpxA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007958 lpxA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000213 lpxA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071112 lpxA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086532 lpxA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000168 lpxA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000207 lpxA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002079 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009456 lpxA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003464 lpxA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002432 lpxA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000506 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241056 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007544 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000652 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005107 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002304 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118734 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008399 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007335 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001155 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009265 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006399 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032882 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005594 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003543 lpxA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001983 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006051 lpxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004978 lpxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003093 lpxA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003718 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001261 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 171664 to 182452
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000215rsePCDSforward170650172002Upstream
AEC-0000216bamACDSforward172032174464Upstream
AEC-0000217skpCDSforward174586175071Upstream
AEC-0000218lpxDCDSforward175075176100Upstream
AEC-0000219fabZCDSforward176205176660Upstream
AEC-0000220lpxACDSforward176664177452Matches
AEC-0000221lpxBCDSforward177452178600Overlaps Downstream
AEC-0000222rnhBCDSforward178597179193Downstream
AEC-0000223dnaECDSforward179230182712Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948