Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000221 (lpxB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000221 showshow history
Names
lpxB ECDH10B_0162
Product
tetraacyldisaccharide-1-P synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 177452 178600 1149 383
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003835 (IPR003835 Glycosyl transferase, family 19) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008915 lipid-A-disaccharide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000620
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0162 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tetraacyldisaccharide-1-P synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003835 Glycosyl transferase, family 19 Protein Sequence Similarity - InterPro Domain: IPR003835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000620 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000620
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008915 lipid-A-disaccharide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003835
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000509 lpxB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000393 lpxB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017470 lpxB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000943 lpxB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000668 lpxB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009287 lpxB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000191 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006335 lpxB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000177 lpxB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009539 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007903 lpxB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007282 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076284 lpxB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005834 lpxB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006847 lpxB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000193 lpxB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004635 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002480 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007941 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008624 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010281 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005032 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010284 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008761 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010623 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009365 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010528 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010192 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009558 lpxB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024098 lpxB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007873 lpxB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004867 lpxB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000620 lpxB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000182 lpxB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000182 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000194 lpxB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130063 lpxB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001613 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000198 lpxB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061287 lpxB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003007 lpxB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003587 lpxB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001681 lpxB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004449 lpxB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002916 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000257 lpxB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004529 lpxB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000835 lpxB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000804 lpxB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008942 lpxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004633 lpxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008570 lpxB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004583 lpxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005079 lpxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008691 lpxB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004624 lpxB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005806 lpxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000239 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000237 lpxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000297 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004923 lpxB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008419 lpxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004348 lpxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004493 lpxB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105827 lpxB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081941 lpxB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091319 lpxB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004253 lpxB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009228 lpxB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004543 lpxB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000180 lpxB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005573 lpxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007957 lpxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000214 lpxB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071113 lpxB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086533 lpxB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000169 lpxB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000208 lpxB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002080 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009454 lpxB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003465 lpxB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002431 lpxB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000505 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241055 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007543 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000653 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005108 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002303 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118744 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008398 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007334 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001154 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009266 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006398 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032881 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005593 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003542 lpxB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001982 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006050 lpxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004979 lpxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003092 lpxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003717 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001262 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 172452 to 183600
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000216bamACDSforward172032174464Upstream
AEC-0000217skpCDSforward174586175071Upstream
AEC-0000218lpxDCDSforward175075176100Upstream
AEC-0000219fabZCDSforward176205176660Upstream
AEC-0000220lpxACDSforward176664177452Overlaps Upstream
AEC-0000221lpxBCDSforward177452178600Matches
AEC-0000222rnhBCDSforward178597179193Overlaps Downstream
AEC-0000223dnaECDSforward179230182712Downstream
AEC-0000224accACDSforward182725183684Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948