Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000233 (proS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000233 showshow history
Names
proS ECDH10B_0175
Product
prolyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 191161 192879 1719 573
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002316 (IPR002316 Proline-tRNA ligase, class IIa) Jul 2009
Automated Process Approved IPR004154 (IPR004154 Anticodon-binding) Jul 2009
Automated Process Approved IPR007214 (IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain) Jul 2009
Automated Process Approved IPR002314 (IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)) Jul 2009
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Jul 2009
Automated Process Approved IPR004500 (IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006433 prolyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004827 proline-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000657
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0175 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product prolyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004154 Anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR004154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002316 Proline-tRNA ligase, class IIa Protein Sequence Similarity - InterPro Domain: IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Protein Sequence Similarity - InterPro Domain: IPR007214
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Protein Sequence Similarity - InterPro Domain: IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR004500
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000657 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000657
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006433 prolyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004827 proline-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002316
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000289 proS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000244 proS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020447 proS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000955 proS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000656 proS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009300 proS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000205 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006322 proS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000189 proS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009525 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007917 proS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007268 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076301 proS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005848 proS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006831 proS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000206 proS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004650 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002494 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009449 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007954 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009447 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010294 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005045 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010271 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008775 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009378 proS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010834 proS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010178 proS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009571 proS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024110 proS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006467 proS_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004881 proS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000657 proS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000195 proS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000197 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000207 proS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130075 proS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001627 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000211 proS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063843 proS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002016 proS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002086 proS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003961 proS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004462 proS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002902 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000270 proS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004542 proS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000876 proS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000843 proS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008957 proS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004646 proS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008583 proS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004596 proS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005092 proS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008704 proS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004637 proS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005793 proS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000252 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000250 proS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000312 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004936 proS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008406 proS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004362 proS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004507 proS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105856 proS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081956 proS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091357 proS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004239 proS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009215 proS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004556 proS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000193 proS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005586 proS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007944 proS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000230 proS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071127 proS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086546 proS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000182 proS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000223 proS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002092 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009421 drpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003479 drpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002418 proS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000492 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241039 proS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007531 proS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000668 proS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005120 proS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002291 proS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118762 proS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008386 proS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007320 proS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001041 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009278 proS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006386 proS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032868 proS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005581 proS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003527 proS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001967 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006038 proS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004991 proS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003080 proS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003702 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001277 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 186161 to 197879
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000226yaeRCDSforward185981186370Downstream
AEC-0000227tilSCDSforward186435187733Downstream
AEC-0000228rofCDScomplement187782188036Downstream
AEC-0004010yaePCDScomplement188029188229Downstream
AEC-0000229yaeQCDSforward188395188940Downstream
AEC-0000230yaeJCDSforward188937189359Downstream
AEC-0000231nlpECDSforward189373190083Downstream
AEC-0000232yaeFCDScomplement190283191107Downstream
AEC-0000233proSCDScomplement191161192879Matches
AEC-0000234yaeBCDScomplement192991193698Upstream
AEC-0000235rcsFCDScomplement193695194099Upstream
AEC-0000236metQCDScomplement194217195032Upstream
AEC-0000237metICDScomplement195072195725Upstream
AEC-0000238metNCDScomplement195718196749Upstream
AEC-0000239gmhBCDSforward196937197512Upstream
AEC-0004218rrsHrRNAforward197875199416Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948