Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000239 (gmhB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000239 showshow history
Names
gmhB ECDH10B_0181
Product
D,D-heptose 1,7-bisphosphate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 196937 197512 576 192
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Jul 2009
Automated Process Approved IPR004446 (IPR004446 D,D-heptose 1,7-bisphosphate phosphatase) Jul 2009
Automated Process Approved IPR006543 (IPR006543 Histidinol-phosphate phosphatase) Jul 2009
Automated Process Approved IPR006549 (IPR006549 HAD-superfamily hydrolase,subfamily IIIA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004446
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004401 histidinol-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004446
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gmhB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000675
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0181 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Uncurated product D,D-heptose 1,7-bisphosphate phosphatase Experimental - PubMed ID: 11751812
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004446 D,D-heptose 1,7-bisphosphate phosphatase Protein Sequence Similarity - InterPro Domain: IPR004446
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006543 Histidinol-phosphate phosphatase Protein Sequence Similarity - InterPro Domain: IPR006543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006549 HAD-superfamily hydrolase,subfamily IIIA Protein Sequence Similarity - InterPro Domain: IPR006549
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000675 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000675
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004446
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0000105 histidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004401 histidinol-phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006543
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004446
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001822 gmhB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001556 gmhB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046731 gmhB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000961 hisB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000650 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009306 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000211 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006316 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000195 yaeD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009517 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007262 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076307 gmhB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005854 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006825 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000212 gmhB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004656 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002500 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009455 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007960 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009453 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005051 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008781 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010643 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009385 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009577 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024116 gmhB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006461 gmhB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004887 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000675 gmhB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000201 gmhB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000203 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000213 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130081 gmhB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001633 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000217 yaeD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063837 gmhB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002743 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000902 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003955 gmhB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004468 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002895 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000276 gmhB_1 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004548 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000899 yaeD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000866 yaeD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008963 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004652 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005098 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008710 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004643 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005787 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000258 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000256 gmhB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000318 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004942 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008400 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004368 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105873 gmhB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081962 gmhB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091376 gmhB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004233 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004562 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000199 gmhB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005592 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000236 gmhB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071133 gmhB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086552 gmhB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000188 yaeD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000229 gmhB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002098 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009401 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003485 gmhB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002412 gmhB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000486 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241027 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007525 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000676 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005126 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002285 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118784 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007314 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006380 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032862 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005575 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003519 gmhB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001959 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006032 gmhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004997 gmhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003074 gmhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003694 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001285 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 191937 to 202512
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000233proSCDScomplement191161192879Upstream
AEC-0000234yaeBCDScomplement192991193698Upstream
AEC-0000235rcsFCDScomplement193695194099Upstream
AEC-0000236metQCDScomplement194217195032Upstream
AEC-0000237metICDScomplement195072195725Upstream
AEC-0000238metNCDScomplement195718196749Upstream
AEC-0000239gmhBCDSforward196937197512Matches
AEC-0004218rrsHrRNAforward197875199416Downstream
AEC-0004110ileVtRNAforward199485199561Downstream
AEC-0004111alaVtRNAforward199604199679Downstream
AEC-0004219rrlHrRNAforward199863202766Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948