Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000240 (dkgB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000240 showshow history
Names
dkgB ECDH10B_0188
Product
2,5-diketo-D-gluconate reductase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 203271 204074 804 268
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001395 (IPR001395 (DEPRECATED) Aldo/keto reductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dkgB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000692
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0188 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2,5-diketo-D-gluconate reductase B Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001395 (DEPRECATED) Aldo/keto reductase Protein Sequence Similarity - InterPro Domain: IPR001395
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000692 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000692
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002329 dkgB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002451 dkgB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016426 dkgB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000643 dkgB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007364 dkgB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000217 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006309 dkgB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000199 yafB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009510 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007182 dkgB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007255 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076314 yafB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005861 dkgB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006818 dkgB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000219 dkgB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004663 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000015 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009462 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007967 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009460 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008267 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005058 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008779 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010863 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009392 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010625 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008105 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009915 dkgB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024123 dkgB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006454 dkgB_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004894 dkgB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000692 dkgB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000208 dkgB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000210 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000220 dkgB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130088 dkgB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003127 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000227 dkgB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004477 dkgB CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000291 yafB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004556 dkgB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000907 yafB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000871 yafB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005903 dkgB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004659 dkgB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004010 dkgB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004610 dkgB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008718 dkgB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004651 dkgB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006785 dkgB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002543 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002514 yafB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003374 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004950 dkgB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004376 dkgB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105879 yafB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084325 yafB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091385 yafB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009256 dkgB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005600 dkgB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009125 dkgB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000206 yafB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005599 dkgB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005294 dkgB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000243 yafB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071140 yafB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086554 yafB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000194 yafB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000236 yafB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002005 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002764 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003085 dkgB_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003471 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241020 aRA13 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000683 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005133 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002284 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118790 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004873 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003698 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007580 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005449 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032855 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005568 dkgB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003512 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001953 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006025 dkgB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005003 dkgB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003068 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003689 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001290 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 198271 to 209074
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004218rrsHrRNAforward197875199416Upstream
AEC-0004110ileVtRNAforward199485199561Upstream
AEC-0004111alaVtRNAforward199604199679Upstream
AEC-0004219rrlHrRNAforward199863202766Upstream
AEC-0004220rrfHrRNAforward202860202979Upstream
AEC-0004112aspUtRNAforward203032203108Upstream
AEC-0000240dkgBCDSforward203271204074Matches
AEC-0000241yafCCDScomplement204071204985Overlaps Downstream
AEC-0000242yafDCDSforward205226206026Downstream
AEC-0000243yafECDSforward206030206653Downstream
AEC-0000244mltDCDScomplement206701208059Downstream
AEC-0000245gloBCDScomplement208131208886Downstream
AEC-0000246yafSCDSforward208920209642Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948