Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000253 (fadE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000253 showshow history
Names
fadE ECDH10B_0203
Product
acyl coenzyme A dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 214963 217407 2445 815
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009100 (IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) Jul 2009
Automated Process Approved IPR009075 (IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal) Jul 2009
Automated Process Approved IPR006092 (IPR006092 (DEPRECATED) Acyl-CoA dehydrogenase, N-terminal) Jul 2009
Automated Process Approved IPR006090 (IPR006090 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type 1) Jul 2009
Automated Process Approved IPR015396 (IPR015396 Acyl-CoA dehydrogenase, C-terminal, bacterial type) Jul 2009
Automated Process Approved IPR013786 (IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal) Jul 2009
Automated Process Approved IPR006091 (IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain) Jul 2009
Automated Process Approved IPR013764 (IPR013764 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009100
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015396
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003995 acyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006092
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009100
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000743
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0203 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product acyl coenzyme A dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Protein Sequence Similarity - InterPro Domain: IPR009075
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006092 (DEPRECATED) Acyl-CoA dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR006092
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006090 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type 1 Protein Sequence Similarity - InterPro Domain: IPR006090
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013764 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Protein Sequence Similarity - InterPro Domain: IPR006091
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013786
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015396 Acyl-CoA dehydrogenase, C-terminal, bacterial type Protein Sequence Similarity - InterPro Domain: IPR015396
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009100
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000743 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000743
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009100
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015396
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003995 acyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006092
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009100
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002124 fadE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001903 fadE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016015 fadE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002688 fadE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000621 fadE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007385 fadE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000255 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006266 fadE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000235 fadE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009428 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007139 fadE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005850 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076445 fadE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007112 fadE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006777 fadE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000231 fadE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004704 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000061 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009507 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008012 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009506 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008313 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005104 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008733 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008833 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009168 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009439 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009030 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008057 fadE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009955 fadE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024169 fadE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006418 fadE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004932 fadE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000743 fadE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000223 fadE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000250 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000232 fadE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130136 fadE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003194 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000262 fadE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063783 fadE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001984 fadE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000895 fadE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002578 fadE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002839 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000358 fadE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001008 yafH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000999 yafH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002473 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002446 fadE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003307 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004448 fadE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007780 fadE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105986 fadE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084256 fadE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091531 fadE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005613 fadE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005259 fadE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071239 fadE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086632 fadE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000320 yafH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000279 fadE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002652 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009329 yafH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001944 fadE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001811 fadE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000782 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235766 fadE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003282 fadE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000290 fadE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126212 fadE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004127 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030598 fadE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001039 fadE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003445 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007178 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000935 fadE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001093 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003925 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 209963 to 222407
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000247rnhACDScomplement209639210106Downstream
AEC-0000248dnaQCDSforward210171210902Downstream
AEC-0004113aspVtRNAforward211035211111Downstream
AEC-0000249yafTCDSforward211439212224Downstream
AEC-0000250yafUpseudogenecomplement212850213206Downstream
AEC-0000004ISEc6repeat_regionforward213202213492Downstream
AEC-0004047yafFpseudogeneforward213294213482Downstream
AEC-0000251yafVCDScomplement213523214293Downstream
AEC-0000252ivyCDSforward214447214920Downstream
AEC-0000253fadECDScomplement214963217407Matches
AEC-0000254lpcACDSforward217647218225Upstream
AEC-0004410yafJCDSforward218431219198Upstream
AEC-0000255yafKCDScomplement219169219909Upstream
AEC-0000256yafQCDScomplement220065220343Upstream
AEC-0000257dinJCDScomplement220346220606Upstream
AEC-0004411yafLCDSforward220816221565Upstream
AEC-0000258yafMCDSforward221741222238Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948