Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000254 (lpcA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000254 showshow history
Names
lpcA ECDH10B_0204
Product
D-sedoheptulose 7-phosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 217647 218225 579 193
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001347 (IPR001347 Sugar isomerase (SIS)) Jul 2009
Automated Process Approved IPR004515 (IPR004515 Phosphoheptose isomerase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008968 D-sedoheptulose 7-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpcA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000751
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0204 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-sedoheptulose 7-phosphate isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001347 Sugar isomerase (SIS) Protein Sequence Similarity - InterPro Domain: IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004515 Phosphoheptose isomerase Protein Sequence Similarity - InterPro Domain: IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000751 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000751
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008968 D-sedoheptulose 7-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000453 lpcA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000363 lpcA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016017 lpcA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002687 gmhA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000620 gmhA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007386 gmhA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000256 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006265 gmhA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000236 lpcA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009427 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007138 gmhA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005849 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076446 lpcA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007111 gmhA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006776 gmhA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000232 lpcA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004705 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000062 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009508 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008013 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009507 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008314 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005105 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008732 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008834 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009169 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009440 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009031 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008056 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009956 gmhA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024170 lpcA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006417 gmhA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004933 gmhA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000751 gmhA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000224 lpcA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000251 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000233 gmhA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130137 lpcA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003195 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000263 lpcA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063782 gmhA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002002 lpcA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002067 lpcA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002577 gmhA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004522 gmhA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002838 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000359 gmhA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004618 gmhA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001014 ghmA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001005 ghmA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005834 gmhA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004717 gmhA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004070 gmhA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004631 gmhA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006669 gmhA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008787 gmhA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004720 gmhA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006855 gmhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002472 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002445 gmhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003306 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005009 gmhA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008187 gmhA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004449 gmhA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007779 gmhA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105988 gmhA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084255 gmhA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091535 gmhA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009193 gmhA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005531 gmhA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007492 gmhA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000225 lpcA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005614 gmhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005258 gmhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000268 gmhA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071240 gmhA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086633 gmhA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000319 gmhA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000280 lpcA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002651 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009327 gmhA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001943 gmhA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001812 gmhA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000783 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235769 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007442 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003281 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007015 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004274 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126210 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007408 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006815 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004126 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005201 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004415 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030599 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007518 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001040 gmhA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003444 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005062 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007177 gmhA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000936 gmhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001094 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003924 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 212647 to 223225
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000250yafUpseudogenecomplement212850213206Upstream
AEC-0000004ISEc6repeat_regionforward213202213492Upstream
AEC-0004047yafFpseudogeneforward213294213482Upstream
AEC-0000251yafVCDScomplement213523214293Upstream
AEC-0000252ivyCDSforward214447214920Upstream
AEC-0000253fadECDScomplement214963217407Upstream
AEC-0000254lpcACDSforward217647218225Matches
AEC-0004410yafJCDSforward218431219198Downstream
AEC-0000255yafKCDScomplement219169219909Downstream
AEC-0000256yafQCDScomplement220065220343Downstream
AEC-0000257dinJCDScomplement220346220606Downstream
AEC-0004411yafLCDSforward220816221565Downstream
AEC-0000258yafMCDSforward221741222238Downstream
AEC-0004412lfhApseudogenecomplement222462224174Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948