Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000270 (phoE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000270 showshow history
Names
phoE ECDH10B_0223
Product
outer membrane phosphoporin protein E
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 232373 233428 1056 352
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Jul 2009
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Jul 2009
Automated Process Approved IPR013793 (IPR013793 Porin, Gram-negative type, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phoE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000823
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0223 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane phosphoporin protein E Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013793 Porin, Gram-negative type, conserved site Protein Sequence Similarity - InterPro Domain: IPR013793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000823 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000823
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002074 phoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002149 phoE CDS
Ortholog
Person Uncurated Go view Enterobacter sp. 638 AEL-0000952 CDS
Person Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002679 phoE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000585 phoE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007409 phoE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000274 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006204 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000256 phoE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009358 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007120 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005832 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076462 phoE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007092 phoE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006759 phoE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000247 phoE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0004724 phoE CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000085 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009528 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008033 phoE CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0009528 phoE CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0008336 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005125 phoE CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0008712 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008854 phoE CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0009189 phoE CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0009460 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009051 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008036 phoE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009976 phoE CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024189 phoE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006399 phoE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0004951 phoE CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0000823 phoE CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0000243 phoE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000269 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000294 phoE CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0130156 phoE CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003218 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000283 phoE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000283 phoE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004532 CDS
Person Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002827 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000371 phoE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004628 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001039 phoE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005824 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004727 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004080 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004641 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006679 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008797 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004730 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006865 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002462 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002435 phoE CDS
Person Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003296 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0005019 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008176 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004459 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007769 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0106007 phoE CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0084245 phoE CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0091562 phoE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009183 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005521 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007503 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0000268 phoE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005634 phoE CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0005053 phoE CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0071260 phoE CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0086649 phoE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000302 phoE CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0000301 phoE CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 227373 to 238428
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000264ykfJpseudogeneforward227583227789Downstream
AEC-0000265prfHpseudogeneforward227806228306Downstream
AEC-0000266pepDCDScomplement228363229820Downstream
AEC-0000267gptCDSforward230081230539Downstream
AEC-0000268frsACDSforward230631231875Downstream
AEC-0000269crlCDSforward231933232334Downstream
AEC-0000270phoECDScomplement232373233428Matches
AEC-0000271proBCDSforward233716234819Upstream
AEC-0000272proACDSforward234831236084Upstream
AEC-0004114thrWtRNAforward236199236274Upstream
AEC-0004554CP4-6prophageforward236286272039Upstream
AEC-0000273ykfICDScomplement236656236997Upstream
AEC-0000274yafWCDScomplement237018237335Upstream
AEC-0004048ykfHCDScomplement237354237575Upstream
AEC-0000275ykfGCDScomplement237584238060Upstream
AEC-0000276yafXCDScomplement238076238534Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948