Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000288 (mmuP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000288 showshow history
Names
mmuP ECDH10B_0246
Product
CP4-6 prophage; predicted S-methylmethionine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 248653 250056 1404 468
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004840 (IPR004840 Amino acid permease, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mmuP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000893
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0246 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product CP4-6 prophage; predicted S-methylmethionine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004840 Amino acid permease, conserved site Protein Sequence Similarity - InterPro Domain: IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000893 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000893
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004840
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0006037 mmuP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004624 mmuP CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000893 mmuP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000263 mmuP CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063071 mmuP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001649 mmuP CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001915 mmuP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004426 mmuP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003450 cadR_2 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 243653 to 255056
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004554CP4-6prophageforward236286272039Contains
AEC-0000062IS911.1repeat_regionforward243534245518Upstream
AEC-0000283insN-1CDSforward243570243974Upstream
AEC-0000005IS30D.1repeat_regionforward243869245089Upstream
AEC-0000284insI-1CDSforward243931245082Upstream
AEC-0000285insO-1CDSforward245158245583Upstream
AEC-0000286ykfCpseudogeneforward246175247282Upstream
AEC-0000006IS5.1repeat_regioncomplement247283248477Upstream
AEC-0000287insH-1CDScomplement247429248445Upstream
AEC-0000288mmuPCDSforward248653250056Matches
AEC-0000289mmuMCDSforward250043250975Overlaps Downstream
AEC-0000290afuCCDScomplement251084252130Downstream
AEC-0000291afuBCDScomplement252142252504Downstream
AEC-0000007IS1B.1repeat_regioncomplement252491253258Downstream
AEC-0000292insB-2CDScomplement252506253009Downstream
AEC-0000293insA-2CDScomplement252928253203Downstream
AEC-0000063IS30D.4repeat_regionforward253259253439Downstream
AEC-0004049ykgNCDScomplement253352253690Downstream
AEC-0000064ISEhe3.1repeat_regioncomplement253440253753Downstream
AEC-0000294yagBCDScomplement253713254063Downstream
AEC-0000295yagACDScomplement254157255311Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948