Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000289 (mmuM) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000289 showshow history
Names
mmuM ECDH10B_0247
Product
CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 250043 250975 933 311
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003726 (IPR003726 Homocysteine-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003726
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mmuM Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000895
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0247 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003726 Homocysteine-binding domain Protein Sequence Similarity - InterPro Domain: IPR003726
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0000895 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000895
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003726
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005707 mmuM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004431 mmuM CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000386 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000895 mmuM CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000264 mmuM CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063070 mmuM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004120 mmuM CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004016 mmuM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004427 mmuM CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003449 mmuM CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 245043 to 255975
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004554CP4-6prophageforward236286272039Contains
AEC-0000062IS911.1repeat_regionforward243534245518Upstream
AEC-0000005IS30D.1repeat_regionforward243869245089Upstream
AEC-0000284insI-1CDSforward243931245082Upstream
AEC-0000285insO-1CDSforward245158245583Upstream
AEC-0000286ykfCpseudogeneforward246175247282Upstream
AEC-0000006IS5.1repeat_regioncomplement247283248477Upstream
AEC-0000287insH-1CDScomplement247429248445Upstream
AEC-0000288mmuPCDSforward248653250056Overlaps Upstream
AEC-0000289mmuMCDSforward250043250975Matches
AEC-0000290afuCCDScomplement251084252130Downstream
AEC-0000291afuBCDScomplement252142252504Downstream
AEC-0000007IS1B.1repeat_regioncomplement252491253258Downstream
AEC-0000292insB-2CDScomplement252506253009Downstream
AEC-0000293insA-2CDScomplement252928253203Downstream
AEC-0000063IS30D.4repeat_regionforward253259253439Downstream
AEC-0004049ykgNCDScomplement253352253690Downstream
AEC-0000064ISEhe3.1repeat_regioncomplement253440253753Downstream
AEC-0000294yagBCDScomplement253713254063Downstream
AEC-0000295yagACDScomplement254157255311Downstream
AEC-0000296yagECDSforward255585256514Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948