Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000333 (ykgG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000333 showshow history
Names
ykgG ECDH10B_0296
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 298532 299227 696 232
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003741 (IPR003741 LUD domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ykgG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001062
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0296 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003741 LUD domain Protein Sequence Similarity - InterPro Domain: IPR003741
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001062 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001062
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003678 ykgG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003678 ykgG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014762 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007454 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000380 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000299 ykgG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009325 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007087 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005803 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076500 ykgG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007073 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008096 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000289 ykgG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004773 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003859 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010534 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008116 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009193 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007289 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005200 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007999 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008933 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007823 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009095 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007538 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007482 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008897 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024274 ykgG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008756 lutC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005043 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001062 ykgG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000313 ykgG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000334 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000339 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130237 ykgG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004908 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000332 ykgG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062178 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001108 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001069 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005653 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071225 ykgG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255912 ykgG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000333 ykgG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000342 ykgG CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 293532 to 304227
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000329ykgCCDScomplement293450294775Upstream
AEC-0000330ykgDCDSforward295001295855Upstream
AEC-0000331ykgECDSforward296382297101Upstream
AEC-0000332ykgFCDSforward297112298539Overlaps Upstream
AEC-0000333ykgGCDSforward298532299227Matches
AEC-0000334ykgHCDScomplement299470300138Downstream
AEC-0000335betACDScomplement300351302021Downstream
AEC-0000336betBCDScomplement302035303507Downstream
AEC-0000337betICDScomplement303521304108Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948