Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000335 (betA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000335 showshow history
Names
betA ECDH10B_0298
Product
choline dehydrogenase, a flavoprotein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 300351 302021 1671 557
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000172 (IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal) Jul 2009
Automated Process Approved IPR007867 (IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal) Jul 2009
Automated Process Approved IPR012132 (IPR012132 Glucose-methanol-choline oxidoreductase) Jul 2009
Automated Process Approved IPR011533 (IPR011533 Oxygen-dependent choline dehydrogenase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006066 alcohol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012132
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019285 glycine betaine biosynthetic process from choline GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011533
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008812 choline dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011533
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000172
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000172
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name betA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001070
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0298 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product choline dehydrogenase, a flavoprotein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR000172
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR007867
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012132 Glucose-methanol-choline oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR012132
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011533 Oxygen-dependent choline dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR011533
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001070 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001070
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006066 alcohol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012132
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0019285 glycine betaine biosynthetic process from choline GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011533
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000172
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008812 choline dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011533
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000172
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002926 betA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002758 betA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019708 betA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001841 betA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007457 betA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000390 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000306 betA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009323 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007083 betA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005800 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076507 betA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007069 betA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008092 betA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000292 betA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004776 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003868 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010545 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008128 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009205 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007300 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005212 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007989 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008944 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007835 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009107 betA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007549 betA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007471 betA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008908 betA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024286 betA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008749 betA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005052 betA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001070 betA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000315 betA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000341 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000341 betA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130248 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004919 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000341 betA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062004 betA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001010 betA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000437 betA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000336 betA CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236573 betA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001303 betA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005230 betA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002202 betA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119070 betA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008070 betA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004777 betA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001862 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005355 betA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003411 betA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003044 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006319 betA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006821 betA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001263 betA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001505 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003467 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 295351 to 307021
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000330ykgDCDSforward295001295855Downstream
AEC-0000331ykgECDSforward296382297101Downstream
AEC-0000332ykgFCDSforward297112298539Downstream
AEC-0000333ykgGCDSforward298532299227Downstream
AEC-0000334ykgHCDScomplement299470300138Downstream
AEC-0000335betACDScomplement300351302021Matches
AEC-0000336betBCDScomplement302035303507Upstream
AEC-0000337betICDScomplement303521304108Upstream
AEC-0000338betTCDSforward304237306270Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948